hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00873/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0784  ( 1089 res)   mbh00873

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     43.1    3.7e-08   8
HOX      Homeodomain                                     35.3    8.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/8      55    78 ..     1    23 []    13.3      9.9
ZnF_C2H2   2/8      88   110 ..     1    23 []     9.6       26
ZnF_C2H2   3/8     146   169 ..     1    23 []    10.7       19
ZnF_C2H2   4/8     202   225 ..     1    23 []    10.4       21
ZnF_C2H2   5/8     427   449 ..     1    23 []     3.5  1.3e+02
ZnF_C2H2   6/8     469   490 ..     1    23 []     8.2       38
ZnF_C2H2   7/8     492   515 ..     1    23 []    23.8    0.023
ZnF_C2H2   8/8     602   627 ..     1    23 []     1.9  1.9e+02
HOX        1/1     737   798 ..     1    63 []    35.3  8.4e-06

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 8, from 55 to 78: score 13.3, E = 9.9
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C+  C++s +  +a+k H r+vH   
   mKIAA0784    55    FCCSA-CPFSSKFFsAYKSHFRnVH    78   

ZnF_C2H2: domain 2 of 8, from 88 to 110: score 9.6, E = 26
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + Cp+ C +   +k+ L+ H++  H   
   mKIAA0784    88    LNCPY-CTFN-ADKkTLETHIKiFH    110  

ZnF_C2H2: domain 3 of 8, from 146 to 169: score 10.7, E = 19
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C ++ + ++  ++H+++ H   
   mKIAA0784   146    YYCKK-CTYRDPLYeIVRKHIYrEH    169  

ZnF_C2H2: domain 4 of 8, from 202 to 225: score 10.4, E = 21
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C+  C +  +s++aL++H+ + H   
   mKIAA0784   202    IHCKR-CLFMPKSYeALVQHVIeDH    225  

ZnF_C2H2: domain 5 of 8, from 427 to 449: score 3.5, E = 1.3e+02
                   *->ykCpigCgksfsskaLkrHmr.vH<-*
                        C+i C++ f+   +  H  + H   
   mKIAA0784   427    KICTI-CNELFPENVYSVHFEkEH    449  

ZnF_C2H2: domain 6 of 8, from 469 to 490: score 8.2, E = 38
                   *->ykCpigCgksfsskaLkrHmrvH<-*
                       kC + C++  ++  L +Hm +H   
   mKIAA0784   469    SKCLY-CNRYLPTDTLLNHMLIH    490  

ZnF_C2H2: domain 7 of 8, from 492 to 515: score 23.8, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + Cp+ C  +f++ + +  Hmr vH   
   mKIAA0784   492    LSCPY-CRSTFNDVeKMAAHMRmVH    515  

ZnF_C2H2: domain 8 of 8, from 602 to 627: score 1.9, E = 1.9e+02
                   *->ykCpigCg..ksfssk.aLkrHmr.vH<-*
                        Cp+ C +  + +  +aL +H+r++H   
   mKIAA0784   602    TLCPL-CFsiLKGPISdALAHHLReRH    627  

HOX: domain 1 of 1, from 737 to 798: score 35.3, E = 8.4e-06
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      k     s  +   ++L k+F+k+pYP+r e+e+LA++L L ++ +  
   mKIAA0784   737    KGHEDDS-YEARKSFLTKYFNKQPYPTRREIEKLAASLWLWKSDIAS 782  

                   WFQNRRakwkrqekkk<-*
                    F+N+R+k+ r  +k    
   mKIAA0784   783 HFSNKRKKCVRDCEKY    798  

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