hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00873/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0784  ( 1089 res)   mbh00873

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          21.8      0.016   6
Homeobox Homeobox domain                                  7.4    0.00063   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/6      55    78 ..     1    24 []     5.4       30
zf-C2H2    2/6      88   110 ..     1    24 []    10.6      9.3
zf-C2H2    3/6     146   169 ..     1    24 []     4.1       39
zf-C2H2    4/6     202   225 ..     1    24 []     2.3       59
zf-C2H2    5/6     469   490 ..     1    24 []     7.5       18
zf-C2H2    6/6     492   515 ..     1    24 []    18.7     0.14
Homeobox   1/1     744   793 ..     1    57 []     7.4  0.00063

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 6, from 55 to 78: score 5.4, E = 30
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+  C  s +  s +k+H r  H   
   mKIAA0784    55    FCCS-ACPFSSKFFSAYKSHFRNvH    78   

zf-C2H2: domain 2 of 6, from 88 to 110: score 10.6, E = 9.3
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        Cp +C     +k++L++H+++ H   
   mKIAA0784    88    LNCP-YCTFN-ADKKTLETHIKIfH    110  

zf-C2H2: domain 3 of 6, from 146 to 169: score 4.1, E = 39
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C ++    +  ++H+ ++H   
   mKIAA0784   146    YYCK-KCTYRDPLYEIVRKHIYReH    169  

zf-C2H2: domain 4 of 6, from 202 to 225: score 2.3, E = 59
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+  C  + ++ + L +H   +H   
   mKIAA0784   202    IHCK-RCLFMPKSYEALVQHVIEdH    225  

zf-C2H2: domain 5 of 6, from 469 to 490: score 7.5, E = 18
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       kC  +C++     ++L +H+ +H   
   mKIAA0784   469    SKCL-YCNRYL-PTDTLLNHMLIH    490  

zf-C2H2: domain 6 of 6, from 492 to 515: score 18.7, E = 0.14
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +Cp +C  +F++ + + +H+r+ H   
   mKIAA0784   492    LSCP-YCRSTFNDVEKMAAHMRMvH    515  

Homeobox: domain 1 of 1, from 744 to 793: score 7.4, E = 0.00063
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                         R          L k+F+k++YP+r e+e+LA++L L ++ +   
   mKIAA0784   744    YEAR-------KSFLTKYFNKQPYPTRREIEKLAASLWLWKSDIASH 783  

                   FQNRRaKwKk<-*
                   F N+R K+ +   
   mKIAA0784   784 FSNKRKKCVR    793  

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