hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mni/mni08250/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0783  ( 358 res)   mni08250

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 87.1    2.1e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/2     137   187 ..     1    39 []    50.9  1.7e-10
PHD        2/2     280   329 ..     1    39 []    44.2  1.7e-08

Alignments of top-scoring domains:
PHD: domain 1 of 2, from 137 to 187: score 50.9, E = 1.7e-10
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.....epdg.wy
                       C++C+k+++ + ll+Cd +C+ +yH++Cl+ppl++ +++ +++ w+
   mKIAA0783   137    SCgICKKnhdqHlLLLCD-TCKLHYHLgCLDPPLTrmprkTKNSyWQ 182  

                   CprCk<-*
                   C++C    
   mKIAA0783   183 CSECD    187  

PHD: domain 2 of 2, from 280 to 329: score 44.2, E = 1.7e-08
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple....epdg.wyC
                       C+ C++++++++l+ Cd  C+ +yH++Cl+ppl+++++    +w+C
   mKIAA0783   280    ECsTCKGtgdnEnLVRCD-ECRLCYHFgCLDPPLKkspkQTGYgWIC 325  

                   prCk<-*
                    +C    
   mKIAA0783   326 QECD    329  

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