hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni08250/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0783  ( 358 res)   mni08250

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD-finger                                      91.8    1.4e-23   2
C1_3     C1-like domain                                   9.3       0.27   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_3       1/2     136   165 ..     1    30 []     7.9     0.39
PHD        1/2     137   189 ..     1    51 []    58.5  1.5e-13
C1_3       2/2     279   308 ..     1    30 []     9.4     0.27
PHD        2/2     280   331 ..     1    51 []    41.3  2.1e-08

Alignments of top-scoring domains:
C1_3: domain 1 of 2, from 136 to 165: score 7.9, E = 0.39
                   *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-*
                        C +C++ +d +    C +C    H+ C    
   mKIAA0783   136    YSCGICKKNHDQHLLLLCDTCKLHYHLGCL    165  

PHD: domain 1 of 2, from 137 to 189: score 58.5, E = 1.5e-13
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple....eppegkW
                       C++C+k++d    +ll+CD+C+ ++Hl Cl+ppl++ ++  ++  W
   mKIAA0783   137    SCGICKKNHD--QHLLLLCDTCKLHYHLGCLDPPLTrmprKTKNSYW 181  

                   lCpeCtpk<-*
                   +C eC+ +   
   mKIAA0783   182 QCSECDQA    189  

C1_3: domain 2 of 2, from 279 to 308: score 9.4, E = 0.27
                   *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-*
                       +C+ C+  +d+++  +C eC  + H+ C    
   mKIAA0783   279    TECSTCKGTGDNENLVRCDECRLCYHFGCL    308  

PHD: domain 2 of 2, from 280 to 331: score 41.3, E = 2.1e-08
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple...eppegkWl
                       Cs C++++d   ++l+ CD+C  ++H  Cl+ppl++++     +W+
   mKIAA0783   280    ECSTCKGTGD--NENLVRCDECRLCYHFGCLDPPLKkspKQTGYGWI 324  

                   CpeCtpk<-*
                   C eC+ +   
   mKIAA0783   325 CQECDSS    331  

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