hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh00053/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0782 ( 1147 res) mbh00053 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 246.6 2e-69 5 RhoGAP GTPase-activator protein for Rho-like GTPase 226.5 2.3e-63 1 ArfGap Putative GTP-ase activating proteins for the 88.9 6.2e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/5 36 129 .. 1 82 [] 73.2 3.2e-17 PH 2/5 149 239 .. 1 82 [] 36.2 4.4e-06 ArfGap 1/1 243 369 .. 1 139 [] 88.9 6.2e-22 PH 3/5 452 560 .. 1 82 [] 61.0 1.5e-13 PH 4/5 570 664 .. 1 82 [] 18.0 1.4 RhoGAP 1/1 676 858 .. 1 193 [] 226.5 2.3e-63 PH 5/5 983 1095 .. 1 82 [] 58.2 1e-12 Alignments of top-scoring domains: PH: domain 1 of 5, from 36 to 129: score 73.2, E = 3.2e-17 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL vik GwL k ++++ ++kr+++L+ ++L y++s ++ k ++p+ mKIAA0782 36 VIKAGWLDKNPpqgSyIYQKRWVRLDADYLRYFDSNkdaYSKRFVPV 82 sgc.svre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-* + +v + + Fe++t++rt+ ++Aes+ er+eW++alq+a+ ++ mKIAA0782 83 ACIcRVAPiGdqKFEVITnNRTFAFRAESDVERNEWMQALQQAVVEH 129 PH: domain 2 of 5, from 149 to 239: score 36.2, E = 4.4e-06 *->vikeGwLlkkskswkkryfvLfngvLlyyksk......kpkgsipLs + + G L ++ k y+ ++++ + +yk+ ++ + + + +i+++ mKIAA0782 149 PDRAGSLELRG-FKNKLYVAVTGDKVQLYKNLeefhlgIGITFIDMN 194 gcsvre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-* v+e ++++F ++t+ r + ++A+se e+e+W+ea+q aia+a mKIAA0782 195 VGNVKEvDrrSFDLTTpYRIFSFSADSELEKEQWLEAMQGAIAEA 239 ArfGap: domain 1 of 1, from 243 to 369: score 88.9, E = 6.2e-22 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs e +++ + +N++C+DCGa + P+WaS+nl v++C +C+G HR+ mKIAA0782 243 SEVAERIWAAA-PNRFCADCGA-AQPDWASINLCVVICKRCAGEHRG 287 LfGvHiSkVnvRSltLD..tWteeeLrllesckgGNenansfwesnlddf L G +SkV RSl++D++ Wte ++l++ +GN n fw +n+++ mKIAA0782 288 L-GAGVSKV--RSLKMDrkVWTEALIQLFL--HLGNGPGNHFWAANVPPS 332 slkpkdsdaaasvKCeddrqkyesfiaaKYeeklf.rvdke..saee<-* + ++ s+ + + aKY+e + +r++++ +++ee mKIAA0782 333 EALEPSSS----------PGARRYHLEAKYREGKYrRYHPLfgNQEE 369 PH: domain 3 of 5, from 452 to 560: score 61.0, E = 1.5e-13 *->vikeGwLlkks...........k.swkkryfvLfngvLlyyksk... v ++G+L+k + +++ ++++ ++ + +r++vL +gvL+yy++++ mKIAA0782 452 VSHSGFLYKTAsagkplqdrraReEFSRRWCVLSDGVLSYYENErav 498 kpkgsipLsgcsvre.p.........cFeivt.dr.tlllqAeseeeree +p g+i s++ + + + ++ +++Fe++t++++ +l+ e++e ++e mKIAA0782 499 TPNGEIRASEIVCLAvSpldthgfehTFEVYTeGErLYLFGLENAELAHE 548 Wvealqsaiaka<-* Wv+++ +a + mKIAA0782 549 WVKCIAKAFVPP 560 PH: domain 4 of 5, from 570 to 664: score 18.0, E = 1.4 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk....kpkgsip +++ G L k + ++++ ++ +f L+++ L ++++ ++p mKIAA0782 570 FERLGRLPCKAglsLqQAQEGWFALTGSELRAVFPEgpweEPLQLRK 616 Lsgcsvre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka<- L+++s++ + ++ ++ +v + rtl++q e ++ W+ +q+a+a++ mKIAA0782 617 LQELSIQGdSenqVLVLVErRRTLYIQGERRLDFMAWLGVIQKAAASL 664 * mKIAA0782 - - RhoGAP: domain 1 of 1, from 676 to 858: score 226.5, E = 2.3e-63 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. s+iP iv++C++y+ ++Gl+ eGIYR++G++s++++L+++++++ + mKIAA0782 676 SDIPVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLDSLRQDARs 722 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + + ++e+ v dv+++LK++LR+LP+ L+t+++ ++e mKIAA0782 723 V-----------HLKEGEQHVDDVSSALKRFLRDLPDGLFTRAQRLAWLE 761 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a+++ edeee++ ++rell +LPp+nrat ++L++HL mKIAA0782 762 ASEI--------------EDEEEKISRYRELLVHLPPVNRATVKALIsHL 797 nrVaehsevNkMtarNLAivFgPtLlrpp.............ltdikhqn ++V+++s+ N M+ +NLAivFgPtL++ ++++ + ++ ++ + ++ ++ mKIAA0782 798 YCVQCFSDTNQMNTHNLAIVFGPTLFQTDgqdykagkvvedlINHYVVVF 847 kvvetlienad<-* v e ++++ mKIAA0782 848 SVDEEELRKQR 858 PH: domain 5 of 5, from 983 to 1095: score 58.2, E = 1e-12 *->vikeGwLlkks..........k.swkkryfvLfngvLlyyksk...k +k+G ++ +++++ + + +++++++ryf+L +++L +yk+ ++++ mKIAA0782 983 DTKHGMMKFREdrsllglglpSgGFHDRYFILNSSCLRLYKEVrshR 1029 pkgsipLsgcsvre.p..........cFeivt.dr.....tlllqAesee p ++ p+++++v+ +++++ +++ +F++v+++++++++ ++l+++++ mKIAA0782 1030 PEKEWPVKSLKVYLgVkkklrpptcwGFTVVHeTEkhekqQWYLCCDTQM 1079 ereeWvealqsaiaka<-* e++eW++ + s++++ mKIAA0782 1080 ELREWFATFLSVQHDG 1095 //