hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic14040/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0780  ( 1129 res)   mic14040

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TUDOR    Tudor domain                                    89.0    5.8e-22   2
JmjN     Small domain found in the jumonji family of     60.5    2.1e-13   1
PHD      PHD zinc finger                                 55.9    5.2e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      90   132 ..     1    45 []    60.5  2.1e-13
PHD        1/2     762   820 ..     1    39 []    32.5  5.7e-05
PHD        2/2     882   938 ..     1    39 []    31.1  0.00015
TUDOR      1/2     950  1007 ..     1    60 []    49.3  5.2e-10
TUDOR      2/2    1008  1064 ..     1    60 []    39.9  3.4e-07

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 90 to 132: score 60.5, E = 2.1e-13
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                       i++f+P++eEF+ + +Y ++ +++g  A+++G +Kv+PPk+WkP  
   mKIAA0780    90    KIMTFRPSMEEFREFNKYLAYMESKG--AHRAGLAKVIPPKEWKP   132  

                   *
                    
   mKIAA0780     -   -    

PHD: domain 1 of 2, from 762 to 820: score 32.5, E = 5.7e-05
                   *->yC.vCgk.................g.llqCdkgCdrwyHv.Clgppl
                      +C +  +++ + ++++   ++++++ l++C  +C + +H +C+g p 
   mKIAA0780   762    MCfIYSEenvdysppnafleedgtSlLISCA-KCFVRVHAsCYGVPS 807  

                   eepdg.wyCprCk<-*
                   +e+ ++w+C rCk   
   mKIAA0780   808 HEVCDgWLCARCK    820  

PHD: domain 2 of 2, from 882 to 938: score 31.1, E = 0.00015
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C +C+ + ++ +g ++qC+ ++C+ ++Hv+C++ ++   ++++ + 
   mKIAA0780   882    KCiFCRHrvkkvsGaCIQCSyGRCPASFHVtCAHAAGVlmepddwPY 928  

                   dg.wyCprCk<-*
                     +  C r++   
   mKIAA0780   929 VVnITCFRHR    938  

TUDOR: domain 1 of 2, from 950 to 1007: score 49.3, E = 5.2e-10
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++ vG+ v+++++ + ++Y +r+i+v+s+ ++yeV+f+D  +++ +
   mKIAA0780   950    KAISVGQTVITKHR-NTRYYSCRVIDVTSQ-TFYEVMFDDGSFSRDT 994  

                   plsdlrqlpekfa<-*
                    ++d+ + ++ ++   
   mKIAA0780   995 FPEDIVSRNCVKL    1007 

TUDOR: domain 2 of 2, from 1008 to 1064: score 39.9, E = 3.4e-07
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++++G++++++w+ Dg  Y A+  +   +  +y+V f+D G+++  
   mKIAA0780  1008    GPPAEGEVIQVKWP-DGKLYGAKYLGSNVA-YMYQVEFED-GSQIAM 1051 

                   plsdlrqlpekfa<-*
                   +++d+++l+e+++   
   mKIAA0780  1052 KREDIYTLDEELP    1064 

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