hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic14040/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0780  ( 1129 res)   mic14040

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    221.4    1.3e-62   1
JmjN     jmjN domain                                     85.6    9.8e-22   1
PHD      PHD-finger                                       4.7        0.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      90   137 ..     1    55 []    85.6  9.8e-22
JmjC       1/1     252   368 ..     1   126 []   221.4  1.3e-62
PHD        1/1     762   822 ..     1    51 []     4.7      0.1

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 90 to 137: score 85.6, E = 9.8e-22
                   *->eiPvFyPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLE
                      +i++F+P+meEF+ +++Y+a+  ++ gA+++G++KV+PPkeW     
   mKIAA0780    90    KIMTFRPSMEEFREFNKYLAYM-ESKGAHRAGLAKVIPPKEW----- 130  

                   GkPpcald<-*
                    kP++ +d   
   mKIAA0780   131 -KPRQCYD    137  

JmjC: domain 1 of 1, from 252 to 368: score 221.4, E = 1.3e-62
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      +ly+Gm+++t++wH+ed++lySinylhfg+pk WYaiPpe++ ++e 
   mKIAA0780   252    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 297  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     ++++ +  +p++ ++++ ++ lrh++tlisP+v  L++ Gip+ +++Q
   mKIAA0780   298 --RLAQGF--FPSS-SQGCDAF-LRHKMTLISPSV--LKKYGIPFDKITQ 339  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++GEf++tfP++yH++fN+Gfn+ae++NF   
   mKIAA0780   340 EAGEFMITFPYGYHAGFNHGFNCAESTNF    368  

PHD: domain 1 of 1, from 762 to 822: score 4.7, E = 0.1
                   *->yCsvCgkpddd...........aggdllqCDgCdrwfHlaClgpple
                      +C++ ++++ d ++++   +++   +l+ C +C + +H++C+g p  
   mKIAA0780   762    MCFIYSEENVDysppnafleedGTSLLISCAKCFVRVHASCYGVPSH 808  

                   eppegkWlCpeCtpk<-*
                    +  ++WlC +C++    
   mKIAA0780   809 -EVCDGWLCARCKRN    822  

//