hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg09833/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0777 ( 1134 res) mbg09833 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3_1 SH3 domain 195.6 7.7e-55 3 Sorb Sorbin homologous domain 146.1 6.3e-40 1 SH3_2 Variant SH3 domain 106.6 4.8e-28 3 Extensin_2 Extensin-like region -133.0 0.27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sorb 1/1 6 55 .. 1 50 [] 146.1 6.3e-40 Extensin_2 1/1 37 365 .. 1 385 [] -133.0 0.27 SH3_1 1/3 900 954 .. 1 58 [] 73.2 5.3e-18 SH3_2 1/3 901 954 .. 1 69 [] 56.1 7.9e-13 SH3_1 2/3 975 1031 .. 1 58 [] 71.1 2.4e-17 SH3_2 2/3 976 1031 .. 1 69 [] 29.4 8.3e-05 SH3_1 3/3 1078 1134 .] 1 58 [] 53.3 5.4e-12 SH3_2 3/3 1079 1134 .] 1 69 [] 22.1 0.013 Alignments of top-scoring domains: Sorb: domain 1 of 1, from 6 to 55: score 146.1, E = 6.3e-40 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd +ka+++++i++vDE+GIPtA+RtTvdR+KDWYKTMFKQIH+++kPD+ mKIAA0777 6 IKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDE 52 DsD<-* D+D mKIAA0777 53 DTD 55 Extensin_2: domain 1 of 1, from 37 to 365: score -133.0, E = 0.27 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy t+ + ++ p e + Y + pY Y mKIAA0777 37 YKTMFKQIHMVHKPDEDTDMY--------NTPYTY------------ 63 kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpP.....kyvYkS + +Y SP y +S P k Y+ + ++++++ +k mKIAA0777 64 -------NAGLYNSP----YSAQSHPAAKTQTYRPLSKShsdngTDAFKE 102 PPpPvykYkSPPPPthsppPpyvykSPPPPpk..kyvykSpPpptPvYkY P+Pv+ PP P +++ PP k ++ +++S P+ ++ Y mKIAA0777 103 VPSPVPPPHVPPRPR-DQSSTLKHDWDPPDRKvdTRKFRSEPRS--IFEY 149 kSPPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyks + pP P PP P+P p p+ + mKIAA0777 150 EPGKSSILQHERPP-PL----------PPTPTP----VPREPS-----RK 179 ppppephkYvYkSPPPPpP.YvyesvpeqkikYvYkSPPPPkksYk.sps p +p +SP PPp + v + p S P +++ + mKIAA0777 180 PLSVSPSTDGLRSPSPPPRsCVPAPRP---------SAPDLSPTRTgRIN 220 ppkyVYkSpPpPvipykYkS.....PPPPkkkyspaP.......rkpyvY p P yk+ S+ + + PPPkk + +++++ + + +Y mKIAA0777 221 PADIDLENEPW----YKFFSelefgHPPPKKALDYVQdhssgvsNEVSIY 266 kSPPPPtyvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippik.. +S + +S +P+ + ++ ++ ks P + p+++ mKIAA0777 267 QS-----SIDRSLERPSSSASMAGDFR--------KRRKSEPAVGPLRgl 303 ..sssppPvyvYkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPk ++ ss + P + ++ ssP P k PP mKIAA0777 304 gdQSSSRTSPGRADLPGSSSTFTKSFISSSPSSPSRAQGGDD-SKMCPPL 352 hhYiYsSPPPphh<-* Y+ P mKIAA0777 353 CSYSGLNGTPSGE 365 SH3_1: domain 1 of 3, from 900 to 954: score 73.2, E = 5.3e-18 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++A YD++a++s ELsFkkGD++++l k d +W++g+ + G++ mKIAA0777 900 LPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHH---GRV 943 GliPsNYVepv<-* G++P +YVe+ mKIAA0777 944 GIFPISYVEKL 954 SH3_2: domain 1 of 3, from 901 to 954: score 56.1, E = 7.9e-13 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl +++a+ d++a + e Ls+kkGd+v+++ k d +w++ mKIAA0777 901 PAKAVYDFKA-QTSKE------LSFKKGDTVYIL----RKIDQNWYE 936 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P s+ve+l mKIAA0777 937 GEH--HGRV--GIFPISYVEKL 954 SH3_1: domain 2 of 3, from 975 to 1031: score 71.1, E = 2.4e-17 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++A+Y ++a + ELs++kGD i++l+++d +W++g+ gt+ ++ mKIAA0777 975 GEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTN-RQ 1020 GliPsNYVepv<-* G++P++YVe v mKIAA0777 1021 GIFPVSYVEVV 1031 SH3_2: domain 2 of 3, from 976 to 1031: score 29.4, E = 8.3e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd.gww ++a +++a + e Lsl+kGd + ++ k+ d++w+ mKIAA0777 976 EAIAKYNFNA-DTNVE------LSLRKGDRIILL-----KRVDqNWY 1010 lg.eslggGrrrRGlvPssaveel<-* +g+ g +r G +P s+ve++ mKIAA0777 1011 EGkIP-GTNRQ--GIFPVSYVEVV 1031 SH3_1: domain 3 of 3, from 1078 to 1134: score 53.3, E = 5.4e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke + ++ALY Y++r++dEL +++ Dv+ v ek ddgW g + +t+ + mKIAA0777 1078 EPFQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVGTSRRTK-FF 1123 GliPsNYVepv<-* G +P NYV mKIAA0777 1124 GTFPGNYVKRL 1134 SH3_2: domain 3 of 3, from 1079 to 1134: score 22.1, E = 0.013 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl +++a+ +y++ ++++e L l++ dvv v +k ddgw mKIAA0777 1079 PFQALYNYTP-RNEDE------LELRESDVVDVM----EKCDDGWFV 1114 geslggGrrrRGlvPssaveel<-* g+s ++ + G +P ++v+ l mKIAA0777 1115 GTS--RRTKFFGTFPGNYVKRL 1134 //