hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib22030/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0772  ( 324 res)   mib22030

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Oxysterol_BP Oxysterol-binding protein                   16.2    3.9e-09   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Oxysterol_BP   1/1       1   316 [.     1   440 []    16.2  3.9e-09

Alignments of top-scoring domains:
Oxysterol_BP: domain 1 of 1, from 1 to 316: score 16.2, E = 3.9e-09
                   *->kSqhsSsssltsklkfilsepkdltrRldipeeslspisLwsisqlw
                                                                     
   mKIAA0772     -    ----------------------------------------------- -    

                   vGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfly
                                                                     
   mKIAA0772     - -------------------------------------------------- -    

                   vaastlssysettrrvkKPlNPlLGEtFelkrendElpnkgqyrllsEQV
                                               el+re+    +   +r++sEQV
   mKIAA0772     1 ----------------------------ELIRED---LG---FRFISEQV 16   

                   SHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvhtildi
                   SHHPP+sAf+ e ++ + r+ g + +k kF+Gks ++ + G+ + + l  
   mKIAA0772    17 SHHPPISAFYSEGLNQDFRFHGSIYPKLKFWGKSVEAEPRGT-ITLELLK 65   

                   kdingkpEtYtwtqPnttveGILvGkpfvElSGdesvinsstGdkcvIeF
                   ++     E Ytwt P+  v++++ G +++E+ G + ++n+ tGdkc ++F
   mKIAA0772    66 HN-----EAYTWTNPTCCVHNVILGQLWIEQYGIVEIVNHRTGDKCILHF 110  

                   ktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyikKvqsk
                   k+ G f     +++g i  d        kkl+ + GkW++   +++  s 
   mKIAA0772   111 KPCGLFGKELHRVEGYIQ-DKNR-----KKLFIMYGKWTECLWGIDPASY 154  

                   ...segelflDahktphe...............alkvrpLee..qheles
                   ++ ++ e  +D ++ +  ++++++ +++ +++ a  v++  e+ q  + s
   mKIAA0772   155 esfKKQEKRGDQARKAKMddgpekansdvpgdvADDVPVAQEtvQVIPGS 204  

                   rkaWkkvada...lkvgnltvftktkneleerqRpllkptesrgvedqra
                   +++W  +++++++   +n+t+ft  +nele+     l+pt+ r+++d+r 
   mKIAA0772   205 KLLWRINSRPpnsAQMYNFTSFTVSLNELESGMEKTLPPTDCRLRPDIRG 254  

                   lfkrledkedldkeekkekpeaddkerkqkgslyepkwfvpsgqpvtdKe
                   +++++ d +  +ke+ +ek++++ ker    ++ ++ wf p   p t   
   mKIAA0772   255 MENGNMDLASQEKERLEEKQREARKERAKEDAEWRTRWFSPGNNPYT--G 302  

                   klyikarkeyWefrKk<-*
                      + + + y    ++   
   mKIAA0772   303 APDWLYAGHYF--ERN    316  

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