hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01443/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0770  ( 894 res)   mbh01443

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CNH      Domain found in NIK1-like kinases, mouse cit   -19.4     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CNH        1/1      46   325 ..     1   375 []   -19.4   0.0017

Alignments of top-scoring domains:
CNH: domain 1 of 1, from 46 to 325: score -19.4, E = 0.0017
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkd.....heg
                         k    i+c + W  +LLvgT +G  +l++ r    d + +++e+
   mKIAA0770    46    ILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRK---DvgcnrFEV 89   

                   tleklis..rrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltq
                   tlek +++ ++ ++qi v + +++L++++ ++  +y+h+L +        
   mKIAA0770    90 TLEKSNKnfSKKIQQIHVVSQFKILVSLLENN--IYVHDLLTF------- 130  

                   gntpiikdalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilfl
                             ++ ++v + ++   ++      c l +    g+   +l  
   mKIAA0770   131 ----------QQITTVSKAKGA-SLFT-----CDLQHT-ETGEE--VLRM 161  

                   caalqssVvllaqwynplkkfklvksSNNiLNNEledikkflkklivplp
                   c+a++++ +l+  w + + +++  +                       ++
   mKIAA0770   162 CVAVRKKLQLY-FWKDREFHELQGD-----------------------FS 187  

                   lfvelvsssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslv
                   ++  + s    ++++c+G +       +++ + ++               
   mKIAA0770   188 VPDVPKSMAWCENSICVGFKR------DYYLIRVD--------------- 216  

                   skedlslpfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvf
                      + s+  +   ++  ++  +p+ v ++          +++  d+  v 
   mKIAA0770   217 --GKGSIKELFPTGK--QL--EPL-VAPLAD------GKVAVGQDDLTVV 253  

                   VNlqGlevrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgel
                    N++G     + k  l w+  p +     py++a+    +eIr ++ + l
   mKIAA0770   254 LNEEG---ICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLL 300  

                   NlqeladrsiikarkiRlLgsCeisdrkIllsssp<-*
                    +q++       ++++R++ s     + I++  s+   
   mKIAA0770   301 -VQSIE------LQRPRFITS---GGSNIIYVASN    325  

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