hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01443/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0770  ( 894 res)   mbh01443

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CNH      CNH domain                                      22.4    5.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CNH        1/1      51   319 ..     1   363 []    22.4  5.6e-08

Alignments of top-scoring domains:
CNH: domain 1 of 1, from 51 to 319: score 22.4, E = 5.6e-08
                   *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhda.......flgklvk
                       + + +   ++ +LLvGT +G  +l+r ++ d + ++ +  l+k  k
   mKIAA0770    51    PLQIDCLAAWEEWLLVGTKQGHLLLYRIRK-DVgcnrfevTLEKSNK 96   

                   iigrrsvtqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgss
                    ++++ ++q+ v+ ++++L++L    ++++y+h+L +             
   mKIAA0770    97 NFSKK-IQQIHVVSQFKILVSLL---ENNIYVHDLLTF------------ 130  

                   kinklpektlarrfavskKipetkghCklccvgfiregycggtkFlcvvA
                              ++ + + K +  +  C l+ +++ +e +       cv A
   mKIAA0770   131 ---------QQITTVSKAKGASLFT-CDLQHTETGEEVLR-----MCV-A 164  

                   lksddlstsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpe
                   +++     ++ ly W                   +++ ++ +  ++ vp 
   mKIAA0770   165 VRK-----KLQLYFW-------------------KDREFHELQGDFSVPD 190  

                   pvqsieflkpslcvGcskgfeillvlfgssgfhslsleGqseaaldlllP
                    + s++   +s+cvG++  ++  +v++             +++  +l+  
   mKIAA0770   191 VPKSMAWCENSICVGFKRDYYLIRVDG-------------KGSIKELFP- 226  

                   sndlslefakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqG
                                    + +  e+++a+  d+  +++  +++ v  N++G
   mKIAA0770   227 -----------------TGKQLEPLVAPLADGK-VAVGQDDLTVVLNEEG 258  

                   rrsrkkkdiselmWegaPesfayslypyllafhdngieIrsletgeltqe
                     ++k      l+W   P +  +  +py+ a+ +  +eIr le + l   
   mKIAA0770   259 ICTQKC----ALNWTDIPVAMEHQ-PPYIVAVLPRYVEIRTLEPRLL--- 300  

                   ladrvqtillnkirllvslrsls<-*
                       vq+i l++ r+  s++s +   
   mKIAA0770   301 ----VQSIELQRPRFITSGGSNI    319  

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