hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03536/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0769  ( 769 res)   mbh03536

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                         144.2    1.4e-38   2
FCH      Fes/CIP4 homology domain                        39.3    5.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      17   113 ..     1   103 []    39.3  5.2e-07
SH3        1/2     501   558 ..     1    58 []    62.9  4.1e-14
SH3        2/2     599   657 ..     1    58 []    83.8    2e-20

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 17 to 113: score 39.3, E = 5.2e-07
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      +++++     +++  L    ++++ lled++ f +++a+iE+eYA++
   mKIAA0769    17    QELRNIQ--GEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQG 61   

                   Lqklskkyfnkkssvgdlr..avreteselgslkkswevllsetdalaks
                    qkl+ +y+++      +++ ++++ ++  + +   w ++l+ t ++a+s
   mKIAA0769    62 IQKLASQYLKRD-----WPgiKTDDRNDYRSMY-PVWKSFLEGTMQVAQS 105  

                   hlqlsedL<-*
                   ++++ e++   
   mKIAA0769   106 RINICENY    113  

SH3: domain 1 of 2, from 501 to 558: score 62.9, E = 4.1e-14
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                       +++++Y+y+a+++dEL++++ ++++v+e+ + ++W +++++  G++
   mKIAA0769   501    LTCKVVYSYKASQPDELTIEEHEVLEVIEDGdMEDWVKARNK-VGQV 546  

                   GlfPsnYVeeie<-*
                   G++P  Y++  +   
   mKIAA0769   547 GYVPEKYLQFPT    558  

SH3: domain 2 of 2, from 599 to 657: score 83.8, E = 2e-20
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks...ddgWweGelnrtG
                      ++v+AlYDye+q++dELsF +G ii++l+k++++ddg weGe    G
   mKIAA0769   599    CFVKALYDYEGQTDDELSFPEGAIIRILNKEnqdDDGFWEGEFS--G 643  

                   keGlfPsnYVeeie<-*
                   ++G fPs  Vee+    
   mKIAA0769   644 RIGVFPSVLVEELS    657  

//