hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03536/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0769  ( 769 res)   mbh03536

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_1    SH3 domain                                     113.9    3.1e-30   2
SH3_2    Variant SH3 domain                              69.3    8.3e-17   2
FCH      Fes/CIP4 homology domain                        50.0    5.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      17   113 ..     1   107 []    50.0  5.3e-11
SH3_1      1/2     501   557 ..     1    58 []    49.3  8.6e-11
SH3_2      1/2     502   557 ..     1    69 []    29.8  6.2e-05
SH3_1      2/2     599   656 ..     1    58 []    67.4    3e-16
SH3_2      2/2     600   656 ..     1    69 []    40.0  5.4e-08

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 17 to 113: score 50.0, E = 5.3e-11
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                       + ++     +++ +L+ + +++++lled++ F +++a+iE+eYA+ 
   mKIAA0769    17    QELRNIQ--GEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQG 61   

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                    qkl+++y+++         ++ +t + +d+ s    +w+++l+ t q++
   mKIAA0769    62 IQKLASQYLKRD-------WPGIKTDDRNDYRSMY-PVWKSFLEGTMQVA 103  

                   klHsqlseqL<-*
                   ++++ + e++   
   mKIAA0769   104 QSRINICENY    113  

SH3_1: domain 1 of 2, from 501 to 557: score 49.3, E = 8.6e-11
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk
                       ++++ Y Y+a+++dEL++++ +v++v+e+ d ++W k+r+k   G+
   mKIAA0769   501    LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMeDWVKARNKV--GQ 545  

                   eGliPsNYVepv<-*
                   +G++P  Y++     
   mKIAA0769   546 VGYVPEKYLQFP    557  

SH3_2: domain 1 of 2, from 502 to 557: score 29.8, E = 6.2e-05
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd..gw
                       ++++ +y+a + ++e      L++++++v++vi     +d d ++w
   mKIAA0769   502    TCKVVYSYKA-SQPDE------LTIEEHEVLEVI-----EDGDmeDW 536  

                   wlgeslggGrrrRGlvPssaveel<-*
                     +++ + G++  G+vP ++++     
   mKIAA0769   537 VKARN-KVGQV--GYVPEKYLQFP    557  

SH3_1: domain 2 of 2, from 599 to 656: score 67.4, E = 3e-16
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd...gWWkgrlkgtg
                       +v+ALYDYe++++dELsF +G +i +l+k++ +++g W+g+     
   mKIAA0769   599    CFVKALYDYEGQTDDELSFPEGAIIRILNKENQdddGFWEGEFS--- 642  

                   GkeGliPsNYVepv<-*
                   G+ G +Ps  Ve+    
   mKIAA0769   643 GRIGVFPSVLVEEL    656  

SH3_2: domain 2 of 2, from 600 to 656: score 40.0, E = 5.4e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggsk...dddg
                      +++a+ dy++ +  +e      Ls+ +G +++++    +k+++dddg
   mKIAA0769   600    FVKALYDYEG-QTDDE------LSFPEGAIIRIL----NKenqDDDG 635  

                   wwlgeslggGrrrRGlvPssaveel<-*
                   +w+ge    Gr   G++Ps +veel   
   mKIAA0769   636 FWEGEF--SGRI--GVFPSVLVEEL    656  

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