hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03527/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0768  ( 1057 res)   mbh03527

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GPS      G-protein-coupled receptor proteolytic site     98.8    6.3e-25   1
HormR    Domain present in hormone receptors             68.6      8e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HormR      1/1      82   147 ..     1    89 []    68.6    8e-16
GPS        1/1     402   454 ..     1    51 []    98.8  6.3e-25

Alignments of top-scoring domains:
HormR: domain 1 of 1, from 82 to 147: score 68.6, E = 8e-16
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                       ++ C+a + + i+W +T++Gq++ +pCP ++ g+            
   mKIAA0768    82    MEESCEAVEAREIMWFKTRQGQVAKQPCPAGTIGV------------ 116  

                   asRnCtedtGvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                    +++C++ +  G W++++         p++snC s+++++++   
   mKIAA0768   117 STYLCLAPD--GIWDPQG---------PDLSNCSSPWVNHIT    147  

GPS: domain 1 of 1, from 402 to 454: score 98.8, E = 6.3e-25
                   *->snpiCvfWdese...tgeWstrGCelvetnkpthttCsCnHLTsFAv
                      +np+C+fW++s+++ tg+Wst+GC+l+ tnk thttCsCnHLT+FAv
   mKIAA0768   402    FNPNCSFWSYSKrtmTGYWSTQGCRLLTTNK-THTTCSCNHLTNFAV 447  

                   Lmdvspn<-*
                   Lm+++++   
   mKIAA0768   448 LMAHVEV    454  

//