hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh03527/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0768 ( 1057 res) mbh03527 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Latrophilin Latrophilin Cytoplasmic C-terminal region 771.9 2.5e-228 1 7tm_2 7 transmembrane receptor (Secretin family 402.0 5.7e-117 1 GPS Latrophilin/CL-1-like GPS domain 106.0 7.1e-28 1 HRM Hormone receptor domain 59.0 1e-13 1 Dicty_CAR Slime mold cyclic AMP receptor -252.9 0.034 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HRM 1/1 83 143 .. 1 76 [] 59.0 1e-13 GPS 1/1 402 454 .. 1 55 [] 106.0 7.1e-28 7tm_2 1/1 462 718 .. 1 296 [] 402.0 5.7e-117 Dicty_CAR 1/1 467 880 .. 1 465 [] -252.9 0.034 Latrophilin 1/1 727 1057 .] 1 404 [] 771.9 2.5e-228 Alignments of top-scoring domains: HRM: domain 1 of 1, from 83 to 143: score 59.0, E = 1e-13 *->glgCpatwDgivCWPrtpaGqlvvvpCPdyfsGfnydttgedfgnay ++ C+a + ++W t Gq++ +pCP ++ G+ ++ mKIAA0768 83 EESCEAVEAREIMWFKTRQGQVAKQPCPAGTIGV-----------ST 118 RnCtenGwwerhpsnwpwpnysaCtsney<-* + C++ ++ + + +p++s+C s++ mKIAA0768 119 YLCLAPDGIW----DPQGPDLSNCSSPWV 143 GPS: domain 1 of 1, from 402 to 454: score 106.0, E = 7.1e-28 *->tnpiCvfWdesslestgvWstdrGCevveenkpshttCsCnHLTtFA +np+C+fW++s++++tg+Wst +GC+++ +nk +httCsCnHLT+FA mKIAA0768 402 FNPNCSFWSYSKRTMTGYWST-QGCRLLTTNK-THTTCSCNHLTNFA 446 vlmdvppn<-* vlm+++++ mKIAA0768 447 VLMAHVEV 454 7tm_2: domain 1 of 1, from 462 to 718: score 402.0, E = 5.7e-117 *->lllLkviytVGyslSSLvaLllAiaifllfRkLhCtRnyIHlNLfas +llL vi++VG+ lS Lv+Ll++i++f++fR L+++Rn+IH+NL++s mKIAA0768 462 DLLLDVITWVGILLS-LVCLLICIFTFCFFRGLQSDRNTIHKNLCIS 507 fiLralsfLikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC +++++l+fLi++++++++++ C mKIAA0768 508 LFVAELLFLIGINRTDQPIA-----------------------------C 528 kvvavflhYfflaNFfWmLVEGlYLhtllvvtvevffserkrfwwYlliG v+a++lh+ffla+F+Wm++EG++L+ +l vevf se++r+++++l+G mKIAA0768 529 AVFAALLHFFFLAAFTWMFLEGVQLYIML---VEVFESEHSRRKYFYLVG 575 WGvPavfvgiwaivrpdkwagygnegCCWlsnedngyfwWiikGPvllvI +G+Pa++v+++a+v+++ +yg+++ CWl++ ++yf+W++ GP++l+I mKIAA0768 576 YGMPALIVAVSAAVDYR---SYGTDKVCWLRL--DTYFIWSFIGPATLII 620 lvNfilFinilriLvqKlridkslspqmgetdqyrk.......krlakst ++N+i++ + l ++ +++ +l+p+ g++d++ ++++++ k++++++ mKIAA0768 621 MLNVIFLGIALYKMFHHTA---ILKPESGCLDNINYednrpfiKSWVIGA 667 LlLlPLLGitwvlflfapeddsqGvssivflylfliLnSfQGffVavlYC ++Ll+LLG+tw ++l+ +++ s+++++ylf+i+nS+QG+f+++++C mKIAA0768 668 IALLCLLGLTWAFGLMYINE-----STVIMAYLFTIFNSLQGMFIFIFHC 712 FlNgEV<-* +l+++V mKIAA0768 713 VLQKKV 718 Dicty_CAR: domain 1 of 1, from 467 to 880: score -252.9, E = 0.034 *->mmtkqeidlsysvLLiADFsSIiGCllVLIGFWRLKLLRNHiTk..v t i ls++ LLi F+ + F L RN i k+ mKIAA0768 467 VITWVGILLSLVCLLICIFTFCF--------FRGLQSDRNTIHKnlC 505 IacFCaTSllKDliStiLTLtekPqneasnggFpCYLYAIVITYGSLACW I++F a l+ li ++ t+ P C +A + LA mKIAA0768 506 ISLFVAELLF--LI--GINRTDQP--------IACAVFAALLHFFFLAAF 543 LWTLCLafSIYnLIVkREPEPEkfE......KyYfllCWglPLIstIvML W + Y + V E fE++++++Ky++l+ +g+P + v mKIAA0768 544 TWMFLEGVQLYIMLV------EVFEsehsrrKYFYLVGYGMPALIVAVSA 587 sKktief.vGNWCWIGekYvGYRFGLFYGPFfaIWgiSAvLVGLTSrYTY + + ++ CW + Y F GP I ++ + G Y mKIAA0768 588 AVDYRSYgTDKVCWL--RLDTYFIWSFIGPATLIIMLNVIFLGIAL---Y 632 sVIr........nsVSDNKDKHmTYQFKLINY..IIVFLvCWVFAvvNRI + +++ +++++ DN INY++ F WV + mKIAA0768 633 KMFHhtailkpeSGCLDN-----------INYedNRPFIKSWVIGAIA-L 670 lNGLnmFPtapNiLHTYLSVSHGFYASVTFIYNNPLMWRYfGsKiLliFt l L++ t+ L Y S A I+N + ++ iF mKIAA0768 671 LCLLGL--TWAFGL-MYINESTVIMAYLFTIFNS------LQGMFIFIF- 710 kFGyFVetqkRLEkN..KNNNNPSPissSrgatdnkldsnstgdhnnnhn +V +qk+ k +K + ++S ++ + + mKIAA0768 711 ---HCV-LQKKVRKEygKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYST 756 nhnnnnnnnnsdfvnndssdvycsSeiESl.SldaeNnidipngadNlnq d v s +i S+ Sl +e n+a mKIAA0768 757 GSQSRIRRMWNDTVRKQSESSFITGDINSSaSLNREGL---LNNARDTSV 803 nqalqqdvkqqfqqqqsptviemqnlkqdqnienneqnencyntidtnie l+ + + i e nc id + mKIAA0768 804 MDTLPLNGN----------------HGNSYSIAGGEYLSNCVQIIDRGYN 837 i.itndedsssselsssd..nekntvennNnynnnnnNnnaNn<-* + t e el+s+ + +n+ e + +n n N Nn mKIAA0768 838 HnETALEKKILKELTSNYipSYLNNHERSSEQNRNMMNKLVNN 880 Latrophilin: domain 1 of 1, from 727 to 1057: score 771.9, E = 2.5e-228 *->hihccSllPrgsPrSalkeSskdsgkrsgSgdPlryslGsqSRIRRM ++hccS g +S+ eSs++sgk+sgS++P+rys+GsqSRIRRM mKIAA0768 727 RTHCCS----G--KST--ESSIGSGKTSGSRTPGRYSTGSQSRIRRM 765 WNDTVRKQsESSFiaGDINStatLNrGamgNhLLtNplLrPhGtnnPYNT WNDTVRKQsESSFi+GDINS+a+LNr mKIAA0768 766 WNDTVRKQSESSFITGDINSSASLNR------------------------ 791 LLAEsvvcNapSapvFNspgsllePKHsLnnaRdtSaMDTLPLNGNFnNS ++ll+ naRdtS+MDTLPLNGN++NS mKIAA0768 792 -------------------EGLLN------NARDTSVMDTLPLNGNHGNS 816 YSLrsGdYhlsdGvqvvDRGlnlndAtAfEKmIisELvhNYiPSYLNlrg YS++ G+Y ls++vq++DRG+n+n+ tA+EK+I++EL++NYiPSYLN+++ mKIAA0768 817 YSIAGGEY-LSNCVQIIDRGYNHNE-TALEKKILKELTSNYIPSYLNNHE 864 rSseakrlelekpVkpvigGssSEDdAivlDdAslFnHedslgLELlhke rSse++r+ ++k+V+++++ +SEDdAivlDdA +FnHe+slgLEL+h+e mKIAA0768 865 RSSEQNRNMMNKLVNNLGS--GSEDDAIVLDDAASFNHEESLGLELIHEE 912 leaPLLppRvySvENHqLYqsdRRRiPkKvKPdeseSfvaeltaeadedl ++aPLLppRvyS++NHq +++ RRR P+ d+seSf+++lt e++edl mKIAA0768 913 SDAPLLPPRVYSTDNHQPHHYSRRRFPQ----DHSESFFPLLTDEHTEDL 958 qSPnRDSLYtSmpnLrDsPsypesspetqaEdLsPpppAkcGdeeDiYYk qSP+RDSLYtSmp+L+++P + +++++tq+E Ak Gd+eD+YYk mKIAA0768 959 QSPHRDSLYTSMPALAGVPAADSVTTSTQTE----AAAAKGGDAEDVYYK 1004 SmPPnLgARnHvHqLqtYYQvsRGssdGYivppnkeGtiPeGSSdvREGq Sm PnLg+RnHvH+L+ YYQ++RGssdG+ivppnk+G PeG S+ G+ mKIAA0768 1005 SM-PNLGSRNHVHPLHAYYQLGRGSSDGFIVPPNKDGASPEGTSK---GP 1050 mqLVTSL<-* ++LVTSL mKIAA0768 1051 AHLVTSL 1057 //