hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm04328/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0765 ( 569 res) mpm04328 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM RNA recognition motif 85.5 6.4e-21 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RRM 1/3 216 286 .. 1 121 [] 14.1 0.14 RRM 2/3 342 414 .. 1 121 [] 39.4 4.8e-07 RRM 3/3 456 528 .. 1 121 [] 33.8 2.4e-05 Alignments of top-scoring domains: RRM: domain 1 of 3, from 216 to 286: score 14.1, E = 0.14 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri + V + p+++ e d+re+F v v++ mKIAA0765 216 YVSVHGM--PFSAMENDVREFF--------------HGL-RVDAVHL 245 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli ++d + G++ G + V+F +++d A + mKIAA0765 246 LKDHV----------------------GRNNGNGLVKFLSPQDTFEA--L 271 ealnaskGkeledgGrptlglrVe<-* + + ++ r ++V+ mKIAA0765 272 KRNR---MLMI---QRY---VEVS 286 RRM: domain 2 of 3, from 342 to 414: score 39.4, E = 4.8e-07 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +++ ++L p+++ + + ++F +k v++ mKIAA0765 342 CVYLKGL--PFEAENKHVIDFF--------------KKLDIVEDSIY 372 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli + +Gk G +FVeF++ +d ++A + mKIAA0765 373 IAYGP---------------------NGKATGEGFVEFRNDADYKAA--L 399 ealnaskGkeledgGrptlglrVe<-* + + ++++ g+r ++V mKIAA0765 400 -CRH---KQYM--GNRF---IQVH 414 RRM: domain 3 of 3, from 456 to 528: score 33.8, E = 2.4e-05 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri + ++ N+ p+++t+ d+ ++ + +++ mKIAA0765 456 CAHITNI--PFSITKMDVLQFL--------------EGIPVDENAVH 486 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli v + +G+ G a V+F++e+dA k mKIAA0765 487 VLVDN---------------------NGQGLGQALVQFKTEDDAHKS--E 513 ealnaskGkeledgGrptlglrVe<-* ++ k+l +Gr+ V mKIAA0765 514 HLHR----KKL--NGRE---AFVH 528 //