hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04328/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0765  ( 569 res)   mpm04328

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     60.9    2.8e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/2     343   413 ..     1    74 []    34.7  2.1e-06
RRM_1      2/2     457   527 ..     1    74 []    26.9  0.00023

Alignments of top-scoring domains:
RRM_1: domain 1 of 2, from 343 to 413: score 34.7, E = 2.1e-06
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      ++ ++Lp+++  + + d+F+k   ++ si i +     +g+  G +F
   mKIAA0765   343    VYLKGLPFEAENKHVIDFFKKLDIVeDSIYIAYG---PNGKATGEGF 386  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF +  d ++Al   ++++ g+r + v   
   mKIAA0765   387 VEFRNDADYKAALC-RHKQYMGNRFIQV    413  

RRM_1: domain 2 of 2, from 457 to 527: score 26.9, E = 0.00023
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        ++N+p+++t+ d+ ++ + ++  e++  v     ++g+  G a V
   mKIAA0765   457    AHITNIPFSITKMDVLQFLEGIPVDENAVHVLV--DNNGQGLGQALV 501  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F++e+dA k    l+ k+l+gre  v   
   mKIAA0765   502 QFKTEDDAHKSEH-LHRKKLNGREAFV    527  

//