hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp04234/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0763 ( 530 res) mbp04234 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec7 Sec7 domain 219.8 4.1e-62 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sec7 1/1 88 279 .. 1 221 [] 219.8 4.1e-62 Alignments of top-scoring domains: Sec7: domain 1 of 1, from 88 to 279: score 219.8, E = 4.1e-62 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle rk+ +g + FN kP kGi+ Li++g+++ ++p +A fLl mKIAA0763 88 DVIRKRHYRIGLNLFNKKPEKGIQYLIERGFVP--DTPVGVAHFLL- 131 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + LdeALR+f mKIAA0763 132 QRKGLSRQMIGEFLGNrQKQFNRDVLDCVVD-EMDFSAMELDEALRKFQA 180 sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd +R GEaQk +R++eaFS+rY+ c Npgv ++f n mKIAA0763 181 HIRVQGEAQKVERLIEAFSQRYCVC--NPGVvrqFRNP------------ 216 aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE D+ ++L++++I+LNTD +p+VK+++ kM ledF++N+r mKIAA0763 217 -DTIFILAFAIILLNTDMY-SPNVKpER--KMKLEDFVKNLR-------- 254 YEELgindGgDlprefLtelYesIkneei<-* g++dG+D+pre L +Ye I++ e+ mKIAA0763 255 ----GVDDGEDIPRETLIGIYERIRKREL 279 //