hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11441/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0762  ( 729 res)   mbg11441

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  178.1    8.8e-49   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/4     444   494 ..     1    66 []    40.9  1.7e-07
TSP1       2/4     539   588 ..     1    66 []    66.6  3.1e-15
TSP1       3/4     593   643 ..     1    66 []    56.9  2.6e-12
TSP1       4/4     679   728 ..     1    66 []    35.6  6.7e-06

Alignments of top-scoring domains:
TSP1: domain 1 of 4, from 444 to 494: score 40.9, E = 1.7e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       s Ws+WS+CS+ tC +G      r+R+R    + +           
   mKIAA0762   444    YSNWSPWSACSSSTCEKG-----KRMRQR----MLKAQ-----LDLS 476  

                   epCs...EtrpCntqpnLqpCp<-*
                    pC+++++++pC+++     C+   
   mKIAA0762   477 VPCPdtqDFQPCMGP----GCS    494  

TSP1: domain 2 of 4, from 539 to 588: score 66.6, E = 3.1e-15
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       s+WseWS+CS vtCG+G     +rtR+R    + +s          
   mKIAA0762   539    LSPWSEWSDCS-VTCGKG-----MRTRQR----MLKS------LAEL 569  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C ++ ++ + C+++    +Cp   
   mKIAA0762   570 GDCNedleQAEKCMLP----ECP    588  

TSP1: domain 3 of 4, from 593 to 643: score 56.9, E = 2.6e-12
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       seWs WS+C  ++CG+G     + +RtR+      + p+    +gg
   mKIAA0762   593    LSEWSQWSECN-KSCGKG-----HMIRTRT----IQMEPQ----FGG 625  

                   epCs...EtrpCntqpnLqpCp<-*
                    pC+++ + + C t+    +C    
   mKIAA0762   626 VPCPetvQRKKCRTR----KCL    643  

TSP1: domain 4 of 4, from 679 to 728: score 35.6, E = 6.7e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      + +W+ WS+C+ + CGgG     ++ R+ +   v +++ +++    +
   mKIAA0762   679    MRPWTAWSECT-KLCGGG-----IQERYMT---VKKRFKSSQ----F 712  

                   epCs...EtrpCntqpnLqpCp<-*
                    +C +++E r+Cn++      p   
   mKIAA0762   713 TSCKdkkEIRACNVH------P    728  

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