hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg03730/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0760 ( 1400 res) mbg03730 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 467.6 6.1e-136 30 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/30 183 204 .. 1 23 [] 14.5 7.4 ZnF_C2H2 2/30 254 276 .. 1 23 [] 26.9 0.0028 ZnF_C2H2 3/30 282 304 .. 1 23 [] 19.9 0.36 ZnF_C2H2 4/30 310 332 .. 1 23 [] 22.8 0.048 ZnF_C2H2 5/30 338 360 .. 1 23 [] 28.8 0.00073 ZnF_C2H2 6/30 379 402 .. 1 23 [] 21.5 0.12 ZnF_C2H2 7/30 411 434 .. 1 23 [] 19.8 0.4 ZnF_C2H2 8/30 439 461 .. 1 23 [] 17.5 1.9 ZnF_C2H2 9/30 525 549 .. 1 23 [] 20.3 0.26 ZnF_C2H2 10/30 557 580 .. 1 23 [] 18.7 0.8 ZnF_C2H2 11/30 596 619 .. 1 23 [] 27.6 0.0018 ZnF_C2H2 12/30 633 656 .. 1 23 [] 22.5 0.057 ZnF_C2H2 13/30 679 704 .. 1 23 [] 15.3 5.9 ZnF_C2H2 14/30 748 770 .. 1 23 [] 25.6 0.0069 ZnF_C2H2 15/30 778 800 .. 1 23 [] 21.4 0.13 ZnF_C2H2 16/30 808 831 .. 1 23 [] 28.2 0.0011 ZnF_C2H2 17/30 836 859 .. 1 23 [] 24.4 0.016 ZnF_C2H2 18/30 866 889 .. 1 23 [] 24.9 0.011 ZnF_C2H2 19/30 897 919 .. 1 23 [] 23.4 0.031 ZnF_C2H2 20/30 923 946 .. 1 23 [] 21.7 0.1 ZnF_C2H2 21/30 1002 1025 .. 1 23 [] 15.1 6.2 ZnF_C2H2 22/30 1046 1068 .. 1 23 [] 28.1 0.0012 ZnF_C2H2 23/30 1075 1097 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 24/30 1104 1126 .. 1 23 [] 14.5 7.3 ZnF_C2H2 25/30 1136 1158 .. 1 23 [] 5.6 74 ZnF_C2H2 26/30 1236 1259 .. 1 23 [] 27.0 0.0025 ZnF_C2H2 27/30 1284 1306 .. 1 23 [] 23.3 0.033 ZnF_C2H2 28/30 1314 1336 .. 1 23 [] 18.1 1.3 ZnF_C2H2 29/30 1345 1368 .. 1 23 [] 23.7 0.026 ZnF_C2H2 30/30 1375 1398 .. 1 23 [] 18.5 0.92 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 30, from 183 to 204: score 14.5, E = 7.4 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++ f s +L+ H H mKIAA0760 183 YTCDH-CQQDFESLaDLTDHRA-H 204 ZnF_C2H2: domain 2 of 30, from 254 to 276: score 26.9, E = 0.0028 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ksf + + LkrH ++H mKIAA0760 254 YPCQF-CDKSFIRLsYLKRHEQIH 276 ZnF_C2H2: domain 3 of 30, from 282 to 304: score 19.9, E = 0.36 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f++k++ rH++ H mKIAA0760 282 FKCTF-CSRLFKHKrSRDRHIKLH 304 ZnF_C2H2: domain 4 of 30, from 310 to 332: score 22.8, E = 0.048 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C fs+ ++Lk H+++H mKIAA0760 310 YHCHE-CEAAFSRSdHLKIHLKTH 332 ZnF_C2H2: domain 5 of 30, from 338 to 360: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ fss ++L+ Hm+ H mKIAA0760 338 FKCSV-CKRGFSSTsSLQSHMQAH 360 ZnF_C2H2: domain 6 of 30, from 379 to 402: score 21.5, E = 0.12 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C +fs+ ++L++H+ + H mKIAA0760 379 FMCDY-CEDTFSQTeELEKHVLtLH 402 ZnF_C2H2: domain 7 of 30, from 411 to 434: score 19.8, E = 0.4 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C+++f +++ L H+ + H mKIAA0760 411 LQCIH-CPEVFVDEsTLLAHIHqAH 434 ZnF_C2H2: domain 8 of 30, from 439 to 461: score 17.5, E = 1.9 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C+++fss + H+ +H mKIAA0760 439 HKCPM-CPEQFSSVeGVYCHLDSH 461 ZnF_C2H2: domain 9 of 30, from 525 to 549: score 20.3, E = 0.26 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* y Cp+ C+++ f+s L+ H++++H mKIAA0760 525 YSCPY-CSkRDFTSLaVLEIHLKtIH 549 ZnF_C2H2: domain 10 of 30, from 557 to 580: score 18.7, E = 0.8 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+i C s ++ +L++H+r+ H mKIAA0760 557 HTCQI-CLDSMPTLyNLNEHVRkLH 580 [output cut off at A = 10 top alignments] //