hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03730/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0760 ( 1400 res) mbg03730 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 425.2 5.8e-124 30 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.6 0.34 1 C1_4 TFIIH C1-like domain -6.0 0.082 1 DM DM DNA binding domain -8.7 0.82 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/30 183 206 .. 1 24 [] 17.2 0.38 zf-C2H2 2/30 254 276 .. 1 24 [] 32.5 9.5e-06 zf-C2H2 3/30 282 304 .. 1 24 [] 16.6 0.59 zf-C2H2 4/30 310 332 .. 1 24 [] 28.4 0.00016 DM 1/1 308 358 .. 1 48 [] -8.7 0.82 zf-C2H2 5/30 338 360 .. 1 24 [] 30.4 4.3e-05 zf-C2H2 6/30 379 402 .. 1 24 [] 25.5 0.0012 zf-C2H2 7/30 411 434 .. 1 24 [] 16.3 0.74 zf-C2H2 8/30 439 461 .. 1 24 [] 15.8 1 zf-C2H2 9/30 525 549 .. 1 24 [] 18.7 0.14 zf-C2H2 10/30 557 580 .. 1 24 [] 18.0 0.22 zf-C2H2 11/30 596 619 .. 1 24 [] 25.3 0.0015 zf-C2H2 12/30 633 656 .. 1 24 [] 18.0 0.22 zf-C2H2 13/30 679 704 .. 1 24 [] 8.8 14 zf-C2H2 14/30 748 770 .. 1 24 [] 23.9 0.0038 zf-C2H2 15/30 778 800 .. 1 24 [] 18.6 0.15 zf-C2H2 16/30 808 831 .. 1 24 [] 26.0 0.00088 zf-C2H2 17/30 836 859 .. 1 24 [] 18.6 0.14 zf-C2H2 18/30 866 889 .. 1 24 [] 20.1 0.052 C1_4 1/1 837 904 .. 1 55 [] -6.0 0.082 zf-C2H2 19/30 897 919 .. 1 24 [] 19.4 0.083 zf-C2H2 20/30 923 946 .. 1 24 [] 15.2 1.5 zf-C2H2 21/30 1002 1025 .. 1 24 [] 19.2 0.099 zf-C2H2 22/30 1046 1068 .. 1 24 [] 22.6 0.0091 zf-C2H2 23/30 1075 1097 .. 1 24 [] 25.9 0.00095 zf-C2H2 24/30 1104 1126 .. 1 24 [] 4.1 40 zf-C2H2 25/30 1136 1158 .. 1 24 [] 7.8 17 zf-C2H2 26/30 1236 1259 .. 1 24 [] 24.2 0.0031 zf-C2H2 27/30 1284 1306 .. 1 24 [] 13.3 5.1 zf-C2H2 28/30 1314 1336 .. 1 24 [] 19.2 0.095 zf-C3HC4 1/1 1316 1350 .. 1 50 [] 4.6 0.34 zf-C2H2 29/30 1345 1368 .. 1 24 [] 22.1 0.013 zf-C2H2 30/30 1375 1398 .. 1 24 [] 19.5 0.08 Alignments of top-scoring domains: zf-C2H2: domain 1 of 30, from 183 to 206: score 17.2, E = 0.38 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C++ F + ++L+ H+ ++ mKIAA0760 183 YTCD-HCQQDFESLADLTDHRAHrC 206 zf-C2H2: domain 2 of 30, from 254 to 276: score 32.5, E = 9.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksF r s LkrH ++H mKIAA0760 254 YPCQ-FCDKSFIRLSYLKRHEQIH 276 zf-C2H2: domain 3 of 30, from 282 to 304: score 16.6, E = 0.59 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C + F++k + rH++ H mKIAA0760 282 FKCT-FCSRLFKHKRSRDRHIKLH 304 zf-C2H2: domain 4 of 30, from 310 to 332: score 28.4, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C +Fsr+++Lk Hl+tH mKIAA0760 310 YHCH-ECEAAFSRSDHLKIHLKTH 332 DM: domain 1 of 1, from 308 to 358: score -8.7, E = 0.82 *->RipyCqRCen......HGekvpLKGHKryCpfrdCtCkkvCtlvekR + ++C Ce+ ++++H k+ LK H+++ pf+ Ck +++ mKIAA0760 308 KKYHCHECEAafsrsdH-LKIHLKTHSSSKPFKCSVCKR--GFSSTS 351 Rrlmalq<-* ++ + q mKIAA0760 352 SLQSHMQ 358 zf-C2H2: domain 5 of 30, from 338 to 360: score 30.4, E = 4.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C++ Fs+ s+L++H++ H mKIAA0760 338 FKCS-VCKRGFSSTSSLQSHMQAH 360 zf-C2H2: domain 6 of 30, from 379 to 402: score 25.5, E = 0.0012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C +Fs+ ++L++H t H mKIAA0760 379 FMCD-YCEDTFSQTEELEKHVLTlH 402 zf-C2H2: domain 7 of 30, from 411 to 434: score 16.3, E = 0.74 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C +C ++F + s+L +H+ H mKIAA0760 411 LQCI-HCPEVFVDESTLLAHIHQaH 434 zf-C2H2: domain 8 of 30, from 439 to 461: score 15.8, E = 1 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp C + Fs+ + Hl +H mKIAA0760 439 HKCP-MCPEQFSSVEGVYCHLDSH 461 zf-C2H2: domain 9 of 30, from 525 to 549: score 18.7, E = 0.14 *->ykCpfdCg.ksFsrksnLkrHlrt.H<-* y+Cp +C ++ F++ + L+ Hl+t H mKIAA0760 525 YSCP-YCSkRDFTSLAVLEIHLKTiH 549 zf-C2H2: domain 10 of 30, from 557 to 580: score 18.0, E = 0.22 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C s + +nL+ H r+ H mKIAA0760 557 HTCQ-ICLDSMPTLYNLNEHVRKlH 580 zf-C2H2: domain 11 of 30, from 596 to 619: score 25.3, E = 0.0015 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++F + +L+ H+r++H mKIAA0760 596 FHCN-YCPEMFADINSLQEHIRVsH 619 zf-C2H2: domain 12 of 30, from 633 to 656: score 18.0, E = 0.22 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C F + s+L+ H++ H mKIAA0760 633 FFCN-QCSMGFLTESSLTEHIQQaH 656 zf-C2H2: domain 13 of 30, from 679 to 704: score 8.8, E = 14 *->ykCpfdCg..ksFsrksnLkrHlrt.H<-* y+Cp +C ++ F + L++H++ +H mKIAA0760 679 YSCP-YCTnsPIFGSILKLTKHIKEnH 704 zf-C2H2: domain 14 of 30, from 748 to 770: score 23.9, E = 0.0038 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fs+ +++++Hl+ H mKIAA0760 748 YPCN-QCDLKFSNFESFQTHLKLH 770 zf-C2H2: domain 15 of 30, from 778 to 800: score 18.6, E = 0.15 *->ykCpfdCgksFsrksnLkrHlrtH<-* Cp +C++ F ++++L +Hl +H mKIAA0760 778 QACP-QCKEDFDSQESLLQHLTVH 800 zf-C2H2: domain 16 of 30, from 808 to 831: score 26.0, E = 0.00088 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+k Fs+ ++L++Hl H mKIAA0760 808 YVCE-SCDKQFSSVDDLQKHLLDmH 831 zf-C2H2: domain 17 of 30, from 836 to 859: score 18.6, E = 0.14 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+++F +k + + Hl ++H mKIAA0760 836 YHCT-LCQEVFDSKVSIQVHLAVkH 859 zf-C2H2: domain 18 of 30, from 866 to 889: score 20.1, E = 0.052 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+ F+ ++L+ H + +H mKIAA0760 866 YRCT-ACNWDFRKEADLQVHVKHsH 889 C1_4: domain 1 of 1, from 837 to 904: score -6.0, E = 0.082 *->nCyGCqkklpdginkksde....sltSsvYrCpkCknvFCiDCDvFI +C Cq + ++ + + ++s + YrC++C+ +F + D+ + mKIAA0760 837 HCTLCQEVFDSKVSIQVHLavkhSNEKKMYRCTACNWDFRKEADLQV 883 H.........EsLHnCPGCes<-* H ++++ +++ H C++C mKIAA0760 884 HvkhshlgnpAKAHKCIFCGE 904 zf-C2H2: domain 19 of 30, from 897 to 919: score 19.4, E = 0.083 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC Cg++Fs+ +L+ H+ tH mKIAA0760 897 HKCI-FCGETFSTEVELQCHITTH 919 zf-C2H2: domain 20 of 30, from 923 to 946: score 15.2, E = 1.5 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C C k+F L++Hlr +H mKIAA0760 923 YNCR-FCSKAFHAVILLEKHLREkH 946 zf-C2H2: domain 21 of 30, from 1002 to 1025: score 19.2, E = 0.099 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg +++ L++H+ ++H mKIAA0760 1002 YGCD-ICGAAYTMEVLLQNHRLRdH 1025 zf-C2H2: domain 22 of 30, from 1046 to 1068: score 22.6, E = 0.0091 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ++F + L+ Hl+tH mKIAA0760 1046 HKCN-VCSRTFFSENGLREHLQTH 1068 zf-C2H2: domain 23 of 30, from 1075 to 1097: score 25.9, E = 0.00095 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH mKIAA0760 1075 YMCP-ICGERFPSLLTLTEHKVTH 1097 zf-C2H2: domain 24 of 30, from 1104 to 1126: score 4.1, E = 40 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +C+ + +++ H ++H mKIAA0760 1104 GTCR-ICKMPLQSEEEFIEHCQMH 1126 zf-C2H2: domain 25 of 30, from 1136 to 1158: score 7.8, E = 17 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C ++ ++ +Lk H H mKIAA0760 1136 FRCV-VCMQTVTSTLELKIHGTFH 1158 zf-C2H2: domain 26 of 30, from 1236 to 1259: score 24.2, E = 0.0031 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +Cp +C+ +F + ++L++H++++H mKIAA0760 1236 LRCP-ECNVKFESAEDLESHMQVdH 1259 zf-C2H2: domain 27 of 30, from 1284 to 1306: score 13.3, E = 5.1 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+ +F + + + H H mKIAA0760 1284 YQCI-KCQMTFENEREIQIHVANH 1306 zf-C2H2: domain 28 of 30, from 1314 to 1336: score 19.2, E = 0.095 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F +++ L Hl H mKIAA0760 1314 HECK-LCNQMFDSPAKLLCHLIEH 1336 zf-C3HC4: domain 1 of 1, from 1316 to 1350: score 4.6, E = 0.34 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C +C + ++ p l C H +e+ ++ +g+++ mKIAA0760 1316 CKLCNQMFDSPA-----KLLC-HL----------IEHSFEGmGGTFK 1346 CplC<-* Cp+C mKIAA0760 1347 CPVC 1350 zf-C2H2: domain 29 of 30, from 1345 to 1368: score 22.1, E = 0.013 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp +C ++F + L++H+ H mKIAA0760 1345 FKCP-VCFTVFVQANKLQQHIFAvH 1368 zf-C2H2: domain 30 of 30, from 1375 to 1398: score 19.5, E = 0.08 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C ++F + +L++H +++H mKIAA0760 1375 YDCS-QCPQKFFFQTELQNHTMSqH 1398 //