hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic20043/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0758  ( 1143 res)   mic20043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GPS      G-protein-coupled receptor proteolytic site     68.1    1.1e-15   1
IG       Immunoglobulin                                  51.6      1e-10   2
IGc2     Immunoglobulin C-2 Type                         31.8    9.6e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/2      37   110 ..     1    56 []    24.8    0.012
IG         1/2      31   121 ..     1    58 []    30.9  0.00018
IGc2       2/2     276   345 ..     1    56 []     7.0        1
IG         2/2     270   356 ..     1    58 []    21.5     0.12
GPS        1/1     744   799 ..     1    51 []    68.1  1.1e-15

Alignments of top-scoring domains:
IGc2: domain 1 of 2, from 37 to 110: score 24.8, E = 0.012
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.................
                       eG++VtL+C+ + + + n +W++++k+ + +++++ + +++  ++ 
   mKIAA0758    37    FEGDNVTLECE-TEFVTSNTSWYYgEKRSDiqnsdkysihttvinni 82   

                   .sgstLtiknvsleDsGlYtCvArNsvg<-*
                   +   +Lti n++  D+G+Y C ++  +    
   mKIAA0758    83 sLITRLTIYNFTQHDAGMYGCNVTLDIF    110  

IG: domain 1 of 2, from 31 to 121: score 30.9, E = 0.00018
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                        +    eG++vtL+C+ +  +++ +Wy + ++++ +++++ + +++
   mKIAA0758    31    VIpEFIFEGDNVTLECeTEfvtsNTSWYygekrsdiqnsdkysihtt 77   

                   ..........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-
                     ++ +  ++LtI n t  D+   G Y C +t     ++    +L V+  
   mKIAA0758    78 vinnislitrLTIyNFTQHDA---GMYGCNVTlDIFEYG-TVRKLDVT   121  

                   *
                    
   mKIAA0758     -   -    

IGc2: domain 2 of 2, from 276 to 345: score 7.0, E = 1
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp............sgst
                       eGqs+++tC  + +   ++ W  + g ++ ++  + ++ +++ +s 
   mKIAA0758   276    SEGQSFSITCLSDVSSFDEVYWNTsaGIKIHprfytmrryqdgAESV 322  

                   LtiknvsleDsGlYtCvArNsvg<-*
                   L +k  ++e  G+Y+C+ r +++   
   mKIAA0758   323 LMVKTSTREWNGTYHCIFRYKNS    345  

IG: domain 2 of 2, from 270 to 356: score 21.5, E = 0.12
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                        +++v+eG+s ++tC    ++ ++++W ++ + + +++  + ++ +
   mKIAA0758   270    RDpISVSEGQSFSITClSDvssfdEVYWNtsagikihprfytmrryq 316  

                   ......LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-*
                   ++  + L ++  t+e     GtY C  + + s+s   +  +tV+   
   mKIAA0758   317 dgaesvLMVkTSTREWN---GTYHCIFRyKNSYSI-ATKDVTVH    356  

GPS: domain 1 of 1, from 744 to 799: score 68.1, E = 1.1e-15
                   *->snpiCvfWdese...tgeWstrGCelve..tnkpthttCsCnHLTsF
                      ++p+CvfW+ s  ++tg+W+++GC+++++++++  ++ C CnHLTsF
   mKIAA0758   744    GKPQCVFWNFSLannTGGWDSSGCSVEDdgRDNRDRVFCKCNHLTSF 790  

                   AvLmdvspn<-*
                   ++Lm + ++   
   mKIAA0758   791 SILMSPDSP    799  

//