hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mic/mic20043/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0758 ( 1143 res) mic20043 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 7tm_2 7 transmembrane receptor (Secretin family) 53.9 1.7e-12 1 GPS Latrophilin/CL-1-like GPS domain 50.6 3.5e-11 1 ig Immunoglobulin domain 39.2 9.4e-08 2 V-set Immunoglobulin V-set domain 0.6 0.53 2 I-set Immunoglobulin I-set domain -15.7 0.23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/2 39 105 .. 1 65 [] 19.7 0.068 I-set 1/1 27 121 .. 1 97 [] -15.7 0.23 V-set 1/2 26 121 .. 1 130 [] 1.9 0.4 ig 2/2 278 340 .. 1 65 [] 21.8 0.016 V-set 2/2 263 358 .. 1 130 [] 0.8 0.51 GPS 1/1 744 801 .. 1 55 [] 50.6 3.5e-11 7tm_2 1/1 806 1070 .. 1 296 [] 53.9 1.7e-12 Alignments of top-scoring domains: ig: domain 1 of 2, from 39 to 105: score 19.7, E = 0.068 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G+ vtL C++ + + +W+ + k+ + ++ + +++ + ++ mKIAA0758 39 GDNVTLECET---EFVTSNTSWYYGEKrSDIQNSDKYSIHTTVINNI 82 ....sLtitnvtpeDggtYtCvv<-* + ++Lti n+t+ D+g Y C v mKIAA0758 83 slitRLTIYNFTQHDAGMYGCNV 105 I-set: domain 1 of 1, from 27 to 121: score -15.7, E = 0.23 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl kFt +p+ + eG+ +++eC+ + + sW+ +++ +++++ mKIAA0758 27 TKFTVIPE--FIFEGDNVTLECETEFV-TSNTSWYYGekRSDIQN-- 68 lpsdrfkvtydg...GsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa sd+++++ + ++ s +++LtI+n + D+G Y C +t e + mKIAA0758 69 --SDKYSIHTTVinnISLITRLTIYNFTQHDAGMYGCNVTLDIFEYGTVR 116 eLtVq<-* +L V+ mKIAA0758 117 KLDVT 121 V-set: domain 1 of 2, from 26 to 121: score 1.9, E = 0.4 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + t p+ + eG++vtL C mKIAA0758 26 ETKFTV-IPE------------FIFEGDNVTLECETE-----F---- 50 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg t++ +Wy+++ ++ + ++ ++++++ + mKIAA0758 51 VTSNTSWYYGeKRS--------------DIQN----------SDKYSIHT 76 nps...kgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* + ++ + LtI n ++ D G+Y C + + + g+ +L V+ mKIAA0758 77 TVInniSLITRLTIYNFTQHDAGMYGCNvtldifeyGTVRKLDVT 121 ig: domain 2 of 2, from 278 to 340: score 21.8, E = 0.016 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+s+++tC + ++ +v+W + ++++ +t +++++ + mKIAA0758 278 GQSFSITCLS--DVSSFDEVYWNTSAGiKIhPRFYTMRRYQDGAESV 322 tsLtitnvtpeDggtYtCvv<-* L ++ t+e +gtY C mKIAA0758 323 --LMVKTSTREWNGTYHCIF 340 V-set: domain 2 of 2, from 263 to 358: score 0.8, E = 0.51 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++t + +++v+eG+s +++C +s mKIAA0758 263 PANLTI-TRD----------PISVSEGQSFSITCLSD--------VS 290 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + +vyW ++ +++ r+++ + mKIAA0758 291 SFDEVYWNT-SAG---------------IKIHPRFYTMRRYQDGAE---- 320 pskgdfsLtIsnlqlsDsGtYyCa..........gggtrLtVl<-* ++ + ++ +++ +GtY+C + +++ + + ++++ l mKIAA0758 321 ----SVLMVKTS-TREWNGTYHCIfryknsysiaTKDVTVHPL 358 GPS: domain 1 of 1, from 744 to 801: score 50.6, E = 3.5e-11 *->tnpiCvfWdesslestgvWstdrGCevve..enkpshttCsCnHLTt ++p+CvfW+ s + tg+W++ +GC v ++++++ ++ C CnHLT+ mKIAA0758 744 GKPQCVFWNFSLANNTGGWDS-SGCSVEDdgRDNRDRVFCKCNHLTS 789 FAvlm..dvppn<-* F++lm++d+p++ mKIAA0758 790 FSILMspDSPDP 801 7tm_2: domain 1 of 1, from 806 to 1070: score 53.9, E = 1.7e-12 *->lllLkviytVGyslSSLvaLllAiai.fllfR...kLhCtR..nyIH +lL +i ++G++ S +v+L+ +++++ +++ +k + + ++++ mKIAA0758 806 KILLDIISYIGLGFS-IVSLAACLVVeAMVWKsvtKNRTSYmrHICI 851 lNLfasfiLralsfLikdavlfnsvglseadqlsweeslhcsasagkitm N +++++ + f++ a ++++ ++ ++ mKIAA0758 852 VNIAFCLLIADIWFIVAGA-IHDGR--YPLNE------------------ 880 ivvVgCkvvavflhYfflaNFfWmLVEGlYL.htllvvtvevffserkrf + C ++ +f h+f+l+ FfWmL+ Gl L ++l++ + ++ mKIAA0758 881 ---TACVAATFFIHFFYLSVFFWMLTLGLMLfYRLIFIL---HDASKSTQ 924 wwY.lliGWGvPavfvgiwaivrpdkwagygnegCCWlsnedngyfwWii ++ + +G+G P+++ i ++v+ +y ++ CWl+ +++ + + mKIAA0758 925 KAIaFSLGYGCPLIISSITVGVTQPQ-EVYMRKNACWLNW-EDTRALLAF 972 kGPvllvIlvNfilFinilriLvqKlridkslspqmgetdqyrkkrlaks + P+l +++vN+ + + ++ ++++ +dk+ +++ +++ q++ ks mKIAA0758 973 AIPALIIVVVNVSITVVVITKILRPSIGDKPGKQEKSSLFQIS-----KS 1017 tLlLlPLLGitwvlflfapeddsqGvssivflylfliLnSfQGffVavlY +L PLLG+tw ++l + s++vf+ +f++Ln fQG+f+ ++ mKIAA0758 1018 IGVLTPLLGLTWGFGLATVIQG----SNAVFHIIFTLLNAFQGLFILLFG 1063 CFlNgEV<-* C+ ++V mKIAA0758 1064 CLWDQKV 1070 //