hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg20669/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0756 ( 1251 res) mbg20669 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 240.2 1.8e-67 6 IGc2 Immunoglobulin C-2 Type 222.8 2.9e-62 6 FN3 Fibronectin type 3 domain 136.2 3.5e-36 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/6 142 213 .. 1 56 [] 18.5 0.065 IG 1/6 136 225 .. 1 58 [] 14.0 5.1 IGc2 2/6 241 308 .. 1 56 [] 6.4 1.2 IG 2/6 235 322 .. 1 58 [] 40.2 2.9e-07 IGc2 3/6 347 411 .. 1 56 [] 73.1 3.5e-17 IG 3/6 341 422 .. 1 58 [] 59.5 4.3e-13 IGc2 4/6 437 503 .. 1 56 [] 43.1 3.8e-08 IG 4/6 431 514 .. 1 58 [] 32.6 5.4e-05 IGc2 5/6 531 596 .. 1 56 [] 49.2 5.3e-10 IG 5/6 525 607 .. 1 58 [] 40.0 3.3e-07 IGc2 6/6 622 687 .. 1 56 [] 32.5 5.7e-05 IG 6/6 616 698 .. 1 58 [] 53.9 2e-11 FN3 1/4 701 784 .. 1 69 [] 52.7 4.9e-11 FN3 2/4 801 883 .. 1 69 [] 35.6 6.8e-06 FN3 3/4 899 990 .. 1 69 [] 26.0 0.0053 FN3 4/4 1005 1089 .. 1 69 [] 33.8 2.3e-05 Alignments of top-scoring domains: IGc2: domain 1 of 6, from 142 to 213: score 18.5, E = 0.065 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + +++ ++C+a g+p+p+++W++++ + ++++ + ++ ++tL mKIAA0756 142 DPRDNILIECEAKGNPAPSFHWTRnSRFFNiakdprvsmrrRSGTLV 188 i...knvs.leDsGlYtCvArNsvg<-* i+ ++ +++e +G+Y+C+ArN+ g mKIAA0756 189 IdfrSGGRpEEYEGEYQCFARNKFG 213 IG: domain 1 of 6, from 136 to 225: score 14.0, E = 5.1 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++ v + +++ ++C+a++++ ++++W+++++ + ++++ + ++ mKIAA0756 136 VKdHIVDPRDNILIECeAKgnpapSFHWTrnsrffniakdprvsmrr 182 ....LtInvtpeDse.....sgGtYtCaat..sgsasseqgttLtVl<-* ++++L+I+ + +++++ + G+Y+C a+++ g+a s + ++L+V+ mKIAA0756 183 rsgtLVIDFRSG--GrpeeyE-GEYQCFARnkFGTALS-NRIRLQVS 225 IGc2: domain 2 of 6, from 241 to 308: score 6.4, E = 1.2 *->leGqsVtLtCp.asgdpvpnItWlk..gkplp........sgstLti +eG ++tL+C + g p p I W ++ +p+ ++++ ++++++ L + mKIAA0756 241 QEGAPLTLQCNpPPGLPSPVIFWMSssMEPITqdkrvsqgHNGDLYF 287 knvsleDsGl.YtCvArNsvg<-* +nv l D ++Y+C Ar + mKIAA0756 288 SNVMLQDMQTdYSCNARFHFT 308 IG: domain 2 of 6, from 235 to 322: score 40.2, E = 2.9e-07 *->pp.vtvkeGesvtLtC.as......titWy................. +v+v+eG ++tL+C+ +++ +++ i+W++++ + +++++ ++++ mKIAA0756 235 LDpVVVQEGAPLTLQCnPPpglpspVIFWMsssmepitqdkrvsqgh 281 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++L ++nv ++D + +Y C a+ + ++ +++ +++tL+Vl mKIAA0756 282 ngdLYFsNVMLQDMQ--TDYSCNARfhftHTIQQK-NPFTLKVL 322 IGc2: domain 3 of 6, from 347 to 411: score 73.1, E = 3.5e-17 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn l G ++ L+C+asg p+p+I W+k+g lp+++ + ++ ++ L+i+n mKIAA0756 347 LRGMDLLLECIASGVPTPDIAWYKkGGDLPsnkakfenFNKALRITN 393 vsleDsGlYtCvArNsvg<-* vs+eDsG+Y C+A+N++g mKIAA0756 394 VSEEDSGEYFCLASNKMG 411 IG: domain 3 of 6, from 341 to 422: score 59.5, E = 4.3e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++ v +G ++ L+C as+ +++ i Wy+++++ ++++ + + ++ mKIAA0756 341 SSsQMVLRGMDLLLECiASgvptpDIAWYkkggdlpsnkakfenfnk 387 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+nv++eDs G+Y+C a+++ gs+ ++ ++V+ mKIAA0756 388 aLRItNVSEEDS---GEYFCLASnkMGSIRH--TISVRVK 422 IGc2: domain 4 of 6, from 437 to 503: score 43.1, E = 3.8e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti +G++ +L C+a+g+p p+++W +g+pl++ +++++++ g t + mKIAA0756 437 APGEDGRLVCRANGNPKPTVQWMVnGEPLQsappnpnrevAGDTIIF 483 knvsleDsGlYtCvArNsvg<-* ++ + + + +Y+C +N++g mKIAA0756 484 RDTQISSRAVYQCNTSNEHG 503 IG: domain 4 of 6, from 431 to 514: score 32.6, E = 5.4e-05 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ +Ge+ +L C+a++++++t++W+ ++ + ++ ++++++ mKIAA0756 431 PKnLILAPGEDGRLVCrANgnpkpTVQWMvngeplqsappnpnreva 477 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++++++ + + ++Y+C ++ +g + ++ ++Vl mKIAA0756 478 gdtIIFrDTQISSR---AVYQCNTSneHGYLLA--NAFVSVL 514 IGc2: domain 5 of 6, from 531 to 596: score 49.2, E = 5.3e-10 *->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik + + +L Cp g+p p+ +W+k+++g+ l++++ + +++L+ik mKIAA0756 531 ILYNRTRLDCPFFGSPIPTLRWFKngqGSNLDggnyhvyENGSLEIK 577 nvsleDsGlYtCvArNsvg<-* +++eD G+YtCvA+N g mKIAA0756 578 MIRKEDQGIYTCVATNILG 596 IG: domain 5 of 6, from 525 to 607: score 40.0, E = 3.3e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. + + v + + +L C++ +++ +t++W++++++++ ++++ + + mKIAA0756 525 NQlIRVILYNRTRLDCpFFgspipTLRWFkngqgsnldggnyhvyen 571 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L+I+ +++eD+ G+YtC+at+ g+a+ ++L+V+ mKIAA0756 572 gsLEIkMIRKEDQ---GIYTCVATniLGKAEN--QVRLEVK 607 [output cut off at A = 10 top alignments] //