hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg20669/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0756 ( 1251 res) mbg20669 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 202.9 4.8e-57 5 fn3 Fibronectin type III domain 172.5 7.1e-48 4 ig Immunoglobulin domain 157.4 2.5e-43 6 V-set Immunoglobulin V-set domain 57.4 3.1e-13 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/6 144 208 .. 1 65 [] 13.2 2.6 I-set 1/5 129 225 .. 1 97 [] 12.8 0.0011 ig 2/6 243 303 .. 1 65 [] 20.5 0.039 ig 3/6 349 406 .. 1 65 [] 43.4 5.1e-09 V-set 1/3 335 422 .. 1 130 [] 22.8 0.0032 I-set 2/5 332 422 .. 1 97 [] 60.9 2.7e-14 ig 4/6 439 498 .. 1 65 [] 19.1 0.1 I-set 3/5 425 514 .. 1 97 [] 27.6 7.3e-05 ig 5/6 533 591 .. 1 65 [] 28.9 0.00012 V-set 2/3 518 607 .. 1 130 [] 13.4 0.028 I-set 4/5 518 607 .. 1 97 [] 58.8 1.2e-13 ig 6/6 624 682 .. 1 65 [] 32.2 1.2e-05 V-set 3/3 609 698 .. 1 130 [] 21.2 0.0047 I-set 5/5 610 698 .. 1 97 [] 42.7 8e-09 fn3 1/4 701 787 .. 1 84 [] 65.8 9.3e-16 fn3 2/4 800 886 .. 1 84 [] 36.0 8.9e-07 fn3 3/4 898 993 .. 1 84 [] 35.6 1.1e-06 fn3 4/4 1005 1092 .. 1 84 [] 48.8 1.2e-10 Alignments of top-scoring domains: ig: domain 1 of 6, from 144 to 208: score 13.2, E = 2.6 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + + C+++ g+p ++++W+rn+ + ++s ++ ++t mKIAA0756 144 RDNILIECEAK--GNPAPSFHWTRNSRfFNiAKDPRVSMRRRSGTLV 188 tsLtitnvtpeDggtYtCvv<-* + ++ ++e +g+Y C + mKIAA0756 189 IDFRSGGRPEEYEGEYQCFA 208 I-set: domain 1 of 5, from 129 to 225: score 12.8, E = 0.0011 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P++t++ kd V + + eC+++G+P P+ W+++ + + + mKIAA0756 129 PTITKQSvKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI--A 173 psdrfkvtydgGsgtytLtIs....nvqpdDsGkYtCvAtNsaGea.eas ++r++++ + tL+I+ ++++ + +G+Y C A+N++G+a + + mKIAA0756 174 KDPRVSMRRRS----GTLVIDfrsgGRPEEYEGEYQCFARNKFGTAlSNR 219 aeLtVq<-* ++L+V mKIAA0756 220 IRLQVS 225 ig: domain 2 of 6, from 243 to 303: score 20.5, E = 0.039 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G ++tL+C +g p++ ++W + + + ++ ++ s +ngd mKIAA0756 243 GAPLTLQCNPP-PGLPSPVIFWMSSSMePItQDKRVSQGHNGD---- 284 tsLtitnvtpeDggt.YtCvv<-* L ++nv +D t+Y+C + mKIAA0756 285 --LYFSNVMLQDMQTdYSCNA 303 ig: domain 3 of 6, from 349 to 406: score 43.4, E = 5.1e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G ++ L C + +g p +++ W++ g++l++ + n+ mKIAA0756 349 GMDLLLECIA--SGVPTPDIAWYKKGGdLPsNKAKFENFNKA----- 388 tsLtitnvtpeDggtYtCvv<-* L+itnv++eD+g+Y+C + mKIAA0756 389 --LRITNVSEEDSGEYFCLA 406 V-set: domain 1 of 3, from 335 to 422: score 22.8, E = 0.0032 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ +++ s v +G +++L C s + mKIAA0756 335 MY-PQG-TSS----------SQMVLRGMDLLLECIAS----GV---- 361 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn t ++ Wy+ + ++ +++ f + mKIAA0756 362 PTPDIAWYK--------------------------KGGDLPSNKAKFENF 385 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* + L+I+n++ +DsG Y+C +++ ++ + + + V+ mKIAA0756 386 NK----ALRITNVSEEDSGEYFCLasnkmgsiRHTISVRVK 422 I-set: domain 2 of 5, from 332 to 422: score 60.9, E = 2.7e-14 *->PkF...tqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssv P+F + +++ V G ++ +eC ++G P+P++ W+K+G +l+s mKIAA0756 332 PSFmypQGTSSSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS- 377 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL k ++++ + L+I nv +DsG+Y C A+N+ G+ ++++ mKIAA0756 378 ------NKAKFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 419 tVq<-* V+ mKIAA0756 420 RVK 422 ig: domain 4 of 6, from 439 to 498: score 19.1, E = 0.1 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt Ge+ +L+C++ g+p +tv+W +ng +l++ + ++ + t mKIAA0756 439 GEDGRLVCRA--NGNPKPTVQWMVNGEpLQSAPPNPNREVAGDT--- 480 sLtitnvtpeDggtYtCvv<-* +++++ + ++Y C mKIAA0756 481 -IIFRDTQISSRAVYQCNT 498 I-set: domain 3 of 5, from 425 to 514: score 27.6, E = 7.3e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ + +pk++ + Ge+ r+ C++ G+P+PtV+W +G+pl+s +p mKIAA0756 425 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS--AP 469 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq + + + g t ++++ q++ +Y C +N+ G a a++ V mKIAA0756 470 -PNPNREVAG----DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 514 <-* mKIAA0756 - - ig: domain 5 of 6, from 533 to 591: score 28.9, E = 0.00012 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ +L C fg+p +t++W++ng++ + + + +ng+ mKIAA0756 533 YNRTRLDCPF--FGSPIPTLRWFKNGQgSNlDGGNYHVYENGS---- 573 tsLtitnvtpeDggtYtCvv<-* L i+ +++eD g+YtCv+ mKIAA0756 574 --LEIKMIRKEDQGIYTCVA 591 V-set: domain 2 of 3, from 518 to 607: score 13.4, E = 0.028 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + +++ ++v + + +L C + +s mKIAA0756 518 PRMLSA-RNQ----------LIRVILYNRTRLDCPFF----GS---- 545 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg + ++ W++++q + + + g+++++ mKIAA0756 546 PIPTLRWFKNgQGS---------------NLD----------GGNYHVYE 570 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* n+s L I+ ++ +D G+Y+C+ ++ ++ ++ +rL V+ mKIAA0756 571 NGS-----LEIKMIRKEDQGIYTCVatnilgkaENQVRLEVK 607 I-set: domain 4 of 5, from 518 to 607: score 58.8, E = 1.2e-13 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssv P+ + ++ + V + r++C G+P Pt WfK+++G+ l mKIAA0756 518 PRMLSARnQLIRVILYNRTRLDCPFFGSPIPTLRWFKNgqGSNLD-- 562 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL ++ ++v ++g +L+I+ + ++D G+YtCvAtN G+ae ++L mKIAA0756 563 ---GGNYHVYENG-----SLEIKMIRKEDQGIYTCVATNILGKAENQVRL 604 tVq<-* V+ mKIAA0756 605 EVK 607 ig: domain 6 of 6, from 624 to 682: score 32.2, E = 1.2e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v L C+v++ + tv+Wl+++ +l g++ + ++ mKIAA0756 624 GTTVQLECRVKHDPSLKLTVSWLKDDEpLYiGNRMKKEDDS------ 664 tsLtitnvtpeDggtYtCvv<-* Lti v + D g+YtC++ mKIAA0756 665 --LTIFGVAERDQGSYTCMA 682 V-set: domain 3 of 3, from 609 to 698: score 21.2, E = 0.0047 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ p+ ++++G++v L C ++ + +s mKIAA0756 609 PTRIYR-MPE----------DQVAKRGTTVQLECRVK-----HDPSL 639 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg + +v+W +++ p+ ++++r k+ mKIAA0756 640 KL-TVSWLKDdEPL----------------------YIGNRMKKEDD--- 663 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* sLtI + D G Y+C +++ + + LtVl mKIAA0756 664 -------SLTIFGVAERDQGSYTCMasteldqdLAKAYLTVL 698 I-set: domain 5 of 5, from 610 to 698: score 42.7, E = 8e-09 *->PkFtqkpkdveVqeGesarfeCkVtGtP..ePtVsWfKdGqplssvl ++ + p+d++++ G ++ +eC+V+ +P+ + tVsW+Kd++pl mKIAA0756 610 TRIYRMPEDQVAKRGTTVQLECRVKHDPslKLTVSWLKDDEPLYI-- 654 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt +++ ++ +LtI +v +D G YtC A+ + ++ a+a Lt mKIAA0756 655 ----GNRMKKED----DSLTIFGVAERDQGSYTCMASTELDQDLAKAYLT 696 Vq<-* V mKIAA0756 697 VL 698 fn3: domain 1 of 4, from 701 to 787: score 65.8, E = 9.3e-16 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P+ P++l td+ + s++l+W p +++n+pit Y v+ +++ +++ mKIAA0756 701 PDRPRDLELTDLAERSVRLTWIPGDdNNSPITDYVVQF-EEDQFQPg 746 ..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + + pg+ +s++l+ L P+++Y++rV+Avn++G++++S mKIAA0756 747 vwHDHSRFPGSVNSAVLH-LSPYVNYQFRVIAVNEVGsSHPS 787 fn3: domain 2 of 4, from 800 to 886: score 36.0, E = 8.9e-07 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+s P++++ ++++ +++ ++W+p ++ gp +Y v++R + mKIAA0756 800 PeSNPSDVKGEGTRKNNMEITWTPMNatsAFGPNLRYIVKWR---RR 843 ge...wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + +++wn++tv g+ y++ +++Ye+rVqA n+ G+Gpe mKIAA0756 844 ETretWNNVTVWGSR--YVVGQTPVYVPYEIRVQAENDFGkGPEP 886 fn3: domain 3 of 4, from 898 to 993: score 35.6, E = 1.1e-06 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ aPt ++++ ++st ++l+W++ +++ +g + Y+ y + +++ mKIAA0756 898 PrAAPTEVKIRVLNSTAISLQWNRVYsdtVQGQLREYRAYY-WRESS 943 ge........wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS ++ +++ ++ + pg+ + ++ L P+++Y++ + vng+G+Gp+S mKIAA0756 944 LLknlwvsqkRQQASFPGDRPRGVVARLFPYSNYKLEMVVVNGRGdGPRS 993 <-* mKIAA0756 - - fn3: domain 4 of 4, from 1005 to 1092: score 48.8, E = 1.2e-10 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. PsaP++++v+ + ++ l+W++p+++ng + gY ++y p ng + mKIAA0756 1005 PSAPRRFRVRQPNLETINLEWDHPEhPNGILIGYILRY-VPFNGTKl 1050 ..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ + ++++t + ++ P ++Y +++ A++++G+G+ mKIAA0756 1051 gkQMVENFSPNQTKFSVQRADPVSRYRFSLSARTQVGsGEAA 1092 //