hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01166/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0751  ( 1297 res)   mpg01166

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     154.1    1.4e-41   2
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      67.2    2.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     367   446 ..     1    80 []    67.2  2.1e-15
C2         1/2     511   618 ..     1    92 []    85.3  7.5e-21
C2         2/2    1157  1260 ..     1    92 []    68.8  6.8e-16

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 367 to 446: score 67.2, E = 2.1e-15
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      + lG+ +vg++ +++++ ++f+++v++Gs A+  G     +L++GD+
   mKIAA0751   367    AMLGLKVVGgkmtesgrlCAFITKVKKGSLADTVG-----HLRPGDE 408  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +le+NG   ++g+t ee+ +++ ++++   + +v+L+v R+    
   mKIAA0751   409 VLEWNG-RLLQGATFEEVYNIILESKP---EPQVELVVSRPI    446  

C2: domain 1 of 2, from 511 to 618: score 85.3, E = 7.5e-21
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +L v+i+ A++Lp++ ++++++PYVk++  ++++++++++Tk+vkkt
   mKIAA0751   511    QLIVTILGAKDLPsredgrprNPYVKIYflpdrsdknkrRTKTVKKT 557  

                   lsgfNPvWnEesetFeFevpp.......s.LeieVyDk........dfiG
                   l    P+Wn+   tF ++ p ++++ +++ Lei+++D  + ++++++f+G
   mKIAA0751   558 L---EPKWNQ---TFIYS-PVhrrefreRmLEITLWDQarvreeesEFLG 600  

                   rvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ i               l++ l  ++++++   
   mKIAA0751   601 EILIE--------------LETALlDDEPhWY    618  

C2: domain 2 of 2, from 1157 to 1260: score 68.8, E = 6.8e-16
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                      +L+v ii+Ar+L  ++++++ + PYVkv+  +++    ++kTkv +k
   mKIAA0751  1157    QLEVEIIRARGLVvkpgsktlpAPYVKVYlldngvciakkKTKVARK 1203 

                   tlsgfNPvWnEesetFeFevpp..s.LeieVyDk.......dfiGrvtip
                   tl    P + +    + Fe +p+++ L+i V+ + ++ +++ f+G ++i 
   mKIAA0751  1204 TL---EPLYQQ---LLSFEESPqgRvLQIIVWGDygrmdhkSFMGVAQIL 1247 

                   pnnahqhsadglihlsell.ggrh.kl<-*
                                 l+el+ ++   ++   
   mKIAA0751  1248 --------------LDELElSNMViGW    1260 

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