hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp09208/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0750  ( 1106 res)   mbp09208

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        71.5      1e-16   1
LIM      Zinc-binding domain present in Lin-11, Isl-1    46.9    2.6e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1     522   621 ..     1   100 []    71.5    1e-16
LIM        1/1     983  1037 ..     1    52 []    46.9  2.6e-09

Alignments of top-scoring domains:
CH: domain 1 of 1, from 522 to 621: score 71.5, E = 1e-16
                   *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv
                      + + ll W++ ++++ ++ +vt++++++++G++Lc+ ++s++P +++
   mKIAA0750   522    RPNKLLTWCQQQTkgyqhvRVTDLTTSWRSGLALCAIIHSFRP-ELI 567  

                   dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl
                   +++  ++ ++ eN +la+++a+++     +g+++  +++++   +  +++
   mKIAA0750   568 NFDSlnEDDAVENNQLAFDVAKRE-----FGILPVTTGKEMASTQ--EPD 610  

                   ilgviwtLirl<-*
                    l+ +++L+ +   
   mKIAA0750   611 KLSMVMYLSKF    621  

LIM: domain 1 of 1, from 983 to 1037: score 46.9, E = 2.6e-09
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg...tffekd
                       C  C+k ++  e+l+a+g+ +H eCF+Cs+C+ +L+     f  ++
   mKIAA0750   983    TCYFCKKRVYMIERLSAEGHFFHQECFRCSVCSATLRLaayAFDCDE 1029 

                   gklyCkdc<-*
                   gk+yCk++   
   mKIAA0750  1030 GKFYCKPH    1037 

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