hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp09208/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0750 ( 1106 res) mbp09208 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology (CH) domain 118.5 1.3e-31 1 LIM LIM domain 24.8 0.00023 1 Pyr_redox_2 Pyridine nucleotide-disulphide oxidored -40.1 0.65 1 FAD_binding_3 FAD binding domain -139.2 0.055 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pyr_redox_2 1/1 92 303 .. 1 265 [] -40.1 0.65 FAD_binding_3 1/1 90 361 .. 1 384 [] -139.2 0.055 CH 1/1 522 626 .. 1 121 [] 118.5 1.3e-31 LIM 1/1 984 1043 .. 1 62 [] 24.8 0.00023 Alignments of top-scoring domains: Pyr_redox_2: domain 1 of 1, from 92 to 303: score -40.1, E = 0.65 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAiraarlgfgkkglkvalieketlgGGtcynrg +++I+GgGp Gl++Ai++a l g+kv+++ek++ + mKIAA0750 92 KCLIVGGGPCGLRTAIELAYL-----GAKVVVVEKRDT-----F--- 125 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx cipkkvllgaaevgeelkhaadgayGiidagevkfdwa............ ++ + l ++++ +d+ + + ++ ++ mKIAA0750 126 ---------SRNNVLHL----------WPFT--IHDLRglgakkfygkfc 154 RF xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx xxxx .kllarke.vveqlrkkgvevllgtevtgidvi.gftv............ + ++ + ql + v ++lg + ++v+ +v ++++++++++ mKIAA0750 155 aGSIDHISiRQLQLILFKVALMLGV-EVHVNVEfV-RVleppedqenqkv 202 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ....klkdgetVVegedgrgkallggeetltydkliiATGarprrppnep + + ++ ++ + +++d +i Ga +r mKIAA0750 203 gwraEFLPADH--------------ALSDFEFDVII---GADGHRN---T 232 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iPGvdlelklevftlgrsvitsdDalalreklslfpkkkeeaagklalr. ++G+ + e+ +++ +it ++ + + mKIAA0750 233 LEGFRRK---EFRGKLAIAITA----NFINR-----------------Ns 258 RF xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...............rrPn.lteLaLlekaGlelderiGgIvVDeylrTs +++++++++ +++ ++ + +L+ e+ G++l e+ Iv y+ s mKIAA0750 259 taeakveeisgvafiFNQKfFQDLK--EETGIDL-EN---IV---YYKDS 299 RF xxxxxxxxxxxxxxxx svpgIyAaGDvaeggl<-* +++ mKIAA0750 300 ------------THYF 303 FAD_binding_3: domain 1 of 1, from 90 to 361: score -139.2, E = 0.055 *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvlprIRAggl t+ LIVGgGP+GL +A++La G++vvvvE+++++s++ +l mKIAA0750 90 NTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDTFSRNN-----VL 131 nqRTMElLrqaGledrilaegaphegmglffgatSlaGDElgrirtwgti + + + + +Gl ga++ + g+f + mKIAA0750 132 HLWPFTIHDLRGL-------GAKKFY-GKFCAGS---------------- 157 pdaradldFetlltsptrvtvypQnelEpiLrehAeelGsadirfgtevl +d + s ++ + iL + A +lG ++++++ e++ mKIAA0750 158 ------ID----HISIRQLQL--------ILFKVALMLG-VEVHVNVEFV 188 sfe...qDgdgVtAvvr...drrtgeeiEiytvrArYlVGcDGgrStVRk ++++++D+++ ++ r + ++++ + + + + ++G+DG R mKIAA0750 189 RVLeppEDQENQKVGWRaefLPADHAL---SDFEFDVIIGADGH----RN 231 al.GiefeGeg.tiypagsldvlfdapdlselvegrafvvylilnphsrG +l+G+ ++ +++++ a + +f ++ + ++ G mKIAA0750 232 TLeGFRRKEFRgKL--AIAITANFINRNST----------AEAKVEEISG 269 fglgiavvRmvgPtrsgglerrvivvpfgekvedrpeevteeelkqalre + +++ ++ +++++ e + ++ e + mKIAA0750 270 V--------AFIFNQK-------FFQDLKE-----ETGIDLE-------N 292 atgidfllveitw...ksawgvasrvAdryRkG.RVFLAGDAAHihPPtG ++ +++ ++ + ++ +k+ + ++ + +y + + +++ mKIAA0750 293 IVYYKDSTHYFVMtakKQSLLDKGVILNDYIDTeMLLC------------ 330 GqGlNtgiQDAfNLaWKLAaVLrGtAgeeLLDtYeaERrpvaqav....v + + ++ L++Y +E++++a+ + +++ mKIAA0750 331 ------------------SENVN----QDNLLSYAREAADFATNYqlpsL 358 dra<-* d+a mKIAA0750 359 DFA 361 CH: domain 1 of 1, from 522 to 626: score 118.5, E = 1.3e-31 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL + + ll W++++++gy++ vr+t+++t+w+ +GlaLca+ mKIAA0750 522 RPNKLLTWCQQQTKGYQH---------VRVTDLTTSWR-SGLALCAI 558 lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi ++++rP+li+++ sl+++d++eN +la+d+a++e +gi l+ + +++ mKIAA0750 559 IHSFRPELINFD---SLNEDDAVENNQLAFDVAKRE-FGI-LPVTTGKEM 603 vegnpdPDeklvltllwqLirrfq<-* ++ + PD+++ +++l+ ++ f+ mKIAA0750 604 ASTQE-PDKLSMVMYLSKFYELFR 626 LIM: domain 1 of 1, from 984 to 1043: score 24.8, E = 0.00023 *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekd. C+ C+k +y e++ A ++ +H eCFrC+vC +L y +d mKIAA0750 984 CYFCKKRVYMIERL-SAEGHFFHQECFRCSVCSATLRLAA--YAFDc 1027 ..gskelYCkkDYyklfg<-* ++g k +YCk+++ ++ mKIAA0750 1028 deG-K-FYCKPHFVHCKT 1043 //