hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01156/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0746  ( 1185 res)   mbh01156

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sel1     Sel1 repeat                                     98.9      1e-25   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sel1       1/6     742   778 ..     1    58 []    23.6   0.0046
Sel1       2/6     780   815 ..     1    58 []    24.2   0.0031
Sel1       3/6     816   848 ..     1    58 []    11.7      3.6
Sel1       4/6     849   887 ..     1    58 []    36.2  7.3e-07
Sel1       5/6     888   925 ..     1    58 []     2.7       52
Sel1       6/6    1000  1036 ..     1    58 []    18.3     0.18

Alignments of top-scoring domains:
Sel1: domain 1 of 6, from 742 to 778: score 23.6, E = 0.0046
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      a Aq +L+       ++++ G+      G  v k      ++e   A
   mKIAA0746   742    AaAQQRLA-------QMLFWGQQ-----G--VAK------NPEA--A 766  

                   lkwyekAAeqGn<-*
                   ++wy k A       
   mKIAA0746   767 IEWYAKGALETE    778  

Sel1: domain 2 of 6, from 780 to 815: score 24.2, E = 0.0031
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +   y ++         +++G+      G  v+k      + ++  A
   mKIAA0746   780    PaLIYDYA-------IVLFKGQ------G--VKK------NRRL--A 803  

                   lkwyekAAeqGn<-*
                   l++++kAA +G    
   mKIAA0746   804 LELMKKAASKGL    815  

Sel1: domain 3 of 6, from 816 to 848: score 11.7, E = 3.6
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +A + LG      yy   +            +k      +y+k  A
   mKIAA0746   816    HqAVNGLG-----WYY---HK----------FRK------NYAK--A 836  

                   lkwyekAAeqGn<-*
                   +k++ kA e+Gn   
   mKIAA0746   837 AKYWLKAEEMGN    848  

Sel1: domain 4 of 6, from 849 to 887: score 36.2, E = 7.3e-07
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++A ynLG        lyl+G+++    G  vp +     ++ +  A
   mKIAA0746   849    PdASYNLG-------VLYLDGIFP----G--VPGR-----NLTL--A 875  

                   lkwyekAAeqGn<-*
                    ++++kAA+ G+   
   mKIAA0746   876 GEYFHKAAQGGH    887  

Sel1: domain 5 of 6, from 888 to 925: score 2.7, E = 52
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       ++ +        lyy   +G      e    p+      D+ek  A
   mKIAA0746   888    IeGTLWCS-----LYY--ITGNL----ET--FPR------DPEK--A 913  

                   lkwyekAAeqGn<-*
                   + w +  Ae++    
   mKIAA0746   914 VVWAKHVAEKNG    925  

Sel1: domain 6 of 6, from 1000 to 1036: score 18.3, E = 0.18
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + A++++G        ly++G  +         +      D+e+  +
   mKIAA0746  1000    SfAYLKMG-------DLYYYGHQN-------QSQ------DLEL--S 1024 

                   lkwyekAAeqGn<-*
                   ++ y +AA  G+   
   mKIAA0746  1025 VQMYAQAALDGD    1036 

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