hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg11691/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0744 ( 573 res) mbg11691 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Hist_deacetyl Histone deacetylase domain 373.5 2.2e-108 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Hist_deacetyl 1/1 139 485 .. 1 347 [] 373.5 2.2e-108 Alignments of top-scoring domains: Hist_deacetyl: domain 1 of 1, from 139 to 485: score 373.5, E = 2.2e-108 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm +++ ydp +l++ + ++ + +Hpe +R++ i++ L e+gll k+ mKIAA0744 139 ATGIAYDPLMLKHQ-CICGSSTTHPEHAGRIQSIWSRLQETGLLSKC 184 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk e ++ rka++ee++lvHse++ + +sp +++kld mKIAA0744 185 ERIQ----GRKASLEEIQLVHSEHHSLLY-GTSPLDGQKLDP-------- 221 yfn..................vgdDtpvfaglye.aaqlsvGgaldaadr +++ ++++++ ++ + ++ +v++Dt +++ ++aa+ +vG+++++a + mKIAA0744 222 RTLlgddsrkffsslpcgglgVDSDTIWNELHSSgAARMAVGCVIELASK 271 llegeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPyveR +++gel+++++++++PgHHA+ + a+GFC++N +Ai +++l++++ + + mKIAA0744 272 VASGELKNGFAVVRPPGHHAEESAAMGFCFFNSVAITAKYLRDQL-NISK 320 vliiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGditeiG +li+D+DvHHG+GTQ++FY d+ +l++S+H+y+ G+fFPG+ G + e+G mKIAA0744 321 ILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGS--GAPNEVG 368 kgkGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdaivvs +g G+gy++Ni + ++ +++ ++D +Yleaf+t+++pv+++F+Pd+++vs mKIAA0744 369 VGLGEGYNVNIAWTggldPP-MGDVEYLEAFRTVVMPVAREFDPDMVLVS 417 aGfDalegDptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVlEGG aGfDaleg+ Lg++++T +++g+ ++ l+ la g++ + lEGG mKIAA0744 418 AGFDALEGHT-PPLGGYKVTAKCFGHLTKQLMTLAN----GRVALALEGG 462 Ytlraiasavarcwialtggllg<-* +l ai+ a c al+g g mKIAA0744 463 HDLTAICDASEACINALLGNEPG 485 //