hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg16847/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0743 ( 1211 res) mbg16847 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 595.4 2e-174 5 4.1m putative band 4.1 homologues' binding motif 32.1 7.9e-05 1 EGF Epidermal growth factor-like domain. 25.8 0.0061 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LamG 1/5 37 171 .. 1 137 [] 141.0 1.3e-37 LamG 2/5 225 377 .. 1 137 [] 152.0 5.9e-41 EGF 1/2 404 438 .. 1 32 [] 22.6 0.054 LamG 3/5 463 601 .. 1 137 [] 101.7 8.7e-26 LamG 4/5 649 785 .. 1 137 [] 137.7 1.2e-36 EGF 2/2 819 853 .. 1 32 [] 11.1 27 LamG 5/5 881 1008 .. 1 137 [] 83.2 3.2e-20 4.1m 1/1 1157 1175 .. 1 19 [] 32.1 7.9e-05 Alignments of top-scoring domains: LamG: domain 1 of 5, from 37 to 171: score 141.0, E = 1.3e-37 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++sF+T++ nGl+l++g+ d++ l+L+ dG + l++ mKIAA0743 37 SsDEITLSFKTWQRNGLILHTGkSADYVNLALK------DGAVSLVI 77 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv +lGs g+++ ++++ + ++nD+ WH+V+v+rn r+vt+sVDg +++ mKIAA0743 78 NLGS----GAFEAIVEPV-NGKFNDNAWHDVKVTRNLRQVTISVDGILTT 122 sges....t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrv +g+++++ t L +d + +y+GG P++ + +++pvs++F GC++++++ mKIAA0743 123 TGYTqedyTmLGSD----DFFYVGGSPStadlpgSPVSNNFMGCLKEVVY 168 ngk<-* ++ mKIAA0743 169 KNN 171 LamG: domain 2 of 5, from 225 to 377: score 152.0, E = 5.9e-41 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv + +sisf+FrTt+pnGl+l+++++++++++ +++++++ df+a+eL mKIAA0743 225 RmGSISFDFRTTEPNGLILFTHgkpqerkdvrsqkntKVDFFAVELL 271 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g++++ +++ ++ nDG+W++V ++r+ mKIAA0743 272 ------DGNLYLLLDMGS----GTIKVKATQ---KKANDGEWYHVDIQRD 308 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ grs+t+sV+ ++++ +++++++ Ldl+ g++ylGGlPe++ + + mKIAA0743 309 GRSGTISVN-SRRTPFTAsgesEiLDLE----GDMYLGGLPEnraglilp 353 .....lpvspgFrGCirnlrvngk<-* ++ + + g++GCir+l+++g+ mKIAA0743 354 telwtAMLNYGYVGCIRDLFIDGR 377 EGF: domain 1 of 2, from 404 to 438: score 22.6, E = 0.054 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C++ pC n+ ++C ++ + + C+C g Gy g++Ce mKIAA0743 404 QCDsyPCKNN-----AVCKdgwnRFICdCTGTGYWGrTCE 438 LamG: domain 3 of 5, from 463 to 601: score 101.7, E = 8.7e-26 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++sf+F + + GlL+ +++++ d l leL +Gr++l mKIAA0743 463 EaEDVSFRFMSQRAYGLLVATTsrdSADTLRLELD------GGRVKL 503 rydlGsst.....tggparltsdsdrptplnDGqWHrVsverngrsvtLs +++l++++ + ++++gp +l+++ ++lnD++WH+V+v+r g+s+ L+ mKIAA0743 504 MVNLDCIRincnsSKGPETLYAG----QKLNDNEWHTVRVVRRGKSLKLT 549 VDggnpvsges....t.LdldkeesgplylGGlPe....lpvspgFrGCi VD + ++g+ +++t+L+++ ++ G + e++ ++v ++F G + mKIAA0743 550 VD-DDVAEGTMvgdhTrLEFH-----NIETGIMTEkryiSVVPSSFIGHL 593 rnlrvngk<-* ++l++ng mKIAA0743 594 QSLMFNGL 601 LamG: domain 4 of 5, from 649 to 785: score 137.7, E = 1.2e-36 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr t++++ f+F+Tts++G++l+++++g+df+a+eLv G+++++ mKIAA0743 649 TsMHLFFQFKTTSADGFILFNSgdGNDFIAVELV------KGYIHYV 689 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ gp ++ +s ++plnD+qWH V+++r++ ++ +L+VD + mKIAA0743 690 FDLGN----GPNVIKGNS--DRPLNDNQWHNVVITRDsSNTHSLKVD-TK 732 pvsges...t.LdldkeesgplylGGlPe.........lpvspgFrGCir v++++++ ++Ldl+ g+ly Gl + ++ ++ +++++gF+GC+ mKIAA0743 733 VVTQVIngaKnLDLK----GDLYMAGLAQgmysnlpklVASRDGFQGCLA 778 nlrvngk<-* ++ +ng+ mKIAA0743 779 SVDLNGR 785 EGF: domain 2 of 2, from 819 to 853: score 11.1, E = 27 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ C n G+C +++tC+C y+g++C mKIAA0743 819 TCQedSCANQ-----GVCMqqweGFTCdCSMTSYSGnQCN 853 LamG: domain 5 of 5, from 881 to 1008: score 83.2, E = 3.2e-20 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv ++ ++ + F Tt ++G+L+ +++ ++ gdfl+l+++ +G++ mKIAA0743 881 RsDRLAVGFSTTVKDGILVRIDsapgLGDFLQLHIE------QGKIG 921 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg ++++ G ++ ++ + + +tp+nDG++H V+++rng+++tL+VD mKIAA0743 922 VVFNIG------TVDISIKEE-RTPVNDGKYHVVRFTRNGGNATLQVD-N 963 npvsges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvn pv+++ +++++ t ++++ +++ +GG F+G +++l+++ mKIAA0743 964 WPVNEHYptgrqlTiFNTQ----AQIAIGGKD---KGRLFQGQLSGLYYD 1006 gk<-* g mKIAA0743 1007 GL 1008 4.1m: domain 1 of 1, from 1157 to 1175: score 32.1, E = 7.9e-05 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSY ++E ++ mKIAA0743 1157 MYKYRNRDEGSYQVDETRN 1175 //