hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg16847/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0743 ( 1211 res) mbg16847 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Laminin_G_2 Laminin G domain 582.7 2.3e-171 5 Laminin_G_1 Laminin G domain 279.5 4.3e-80 5 EGF EGF-like domain 42.7 8.5e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Laminin_G_2 1/5 45 171 .. 1 141 [] 126.1 6.3e-34 Laminin_G_1 1/5 45 174 .. 1 154 [] 82.5 8.5e-21 Laminin_G_2 2/5 233 377 .. 1 141 [] 158.8 9e-44 Laminin_G_1 2/5 233 380 .. 1 154 [] 112.4 8.4e-30 EGF 1/2 405 437 .. 1 39 [] 23.3 0.0058 Laminin_G_2 3/5 471 601 .. 1 141 [] 84.4 2.3e-21 Laminin_G_1 3/5 471 604 .. 1 154 [] 23.8 8e-05 Laminin_G_2 4/5 657 785 .. 1 141 [] 138.6 1.1e-37 Laminin_G_1 4/5 657 788 .. 1 154 [] 59.5 7.3e-14 EGF 2/2 820 852 .. 1 39 [] 27.4 0.00034 Laminin_G_2 5/5 889 1008 .. 1 141 [] 93.6 3.9e-24 Laminin_G_1 5/5 889 1016 .. 1 154 [] 14.5 0.00055 Alignments of top-scoring domains: Laminin_G_2: domain 1 of 5, from 45 to 171: score 126.1, E = 6.3e-34 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F+T +q nGl+l++g + + ++ L L+dG + l+++l mKIAA0743 45 FKT-WQRNGLILHTGKSaD-----------YVNLALKDGAVSLVINL 79 G..sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G++ + ++ ++k+nD+ WH+V+v+rn r+vt+sVDg + +g +++ mKIAA0743 80 GsgAFEaIVEPVNgKFNDNAWHDVKVTRNLRQVTISVDGIlTTtGyTQED 129 sdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvri + +l + +y+GG p +++++ ++ s++F GC+++v++ mKIAA0743 130 YT--MLGSDDFFYVGGSPSTADLPGSPV---------SnNFMGCLKEVVY 168 nge<-* ++ mKIAA0743 169 KNN 171 Laminin_G_1: domain 1 of 5, from 45 to 174: score 82.5, E = 8.5e-21 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F+T++ +Gl+l t + + D++ l+L dG + + +l mKIAA0743 45 FKTWQRNGLIL----HTGKSA--------DYVNLALKDGAVSLVINL 79 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdges Gsg +++v ++++ +nD+ WH v+++rn r++t+sVdg ++ +++ mKIAA0743 80 GSG-AFEAIVEPVNGK-FNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQ 127 psgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdvs + ++++ L d+ +yvGG P + ++ ++s F GC+++v+ mKIAA0743 128 E-DYTM----LGSDDF--FYVGGSP---STADLPGSPVSNNFMGCLKEVV 167 ingkpld<-* + + mKIAA0743 168 YKNNDIR 174 Laminin_G_2: domain 2 of 5, from 233 to 377: score 158.8, E = 9e-44 *->FRTatqpnGlLlyaggk.g...lp.dtadpksdKflaLeLvdGrlvl FRT t+pnGl+l+++gk++++++++++++ k d f+a+eL dG l+l mKIAA0743 233 FRT-TEPNGLILFTHGKpQerkDVrSQKNTKVD-FFAVELLDGNLYL 277 rydlGsgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.sp +d+Gsg+ + +++k nDG+W++V + r+grs+t+sV+ +++ + s+ mKIAA0743 278 LLDMGSGTiKVKATQkKANDGEWYHVDIQRDGRSGTISVNSRrTPfTaSG 327 gssdtlslnlngplylGGlpessksslltltaaqn.lvvvs.gFvGCird +s+ +l+l+g++ylGGlpe+++ l++ ++++ l + g+vGCird mKIAA0743 328 ESE---ILDLEGDMYLGGLPENRAGLILPTELWTAmL---NyGYVGCIRD 371 vringe<-* ++i+g+ mKIAA0743 372 LFIDGR 377 Laminin_G_1: domain 2 of 5, from 233 to 380: score 112.4, E = 8.4e-30 *->FRTtepsGlLllgYn.Gtntdrrgkkeig...dDFlaleLvdGrlev FRTtep+Gl+l ++G+ +r++ + + ++++DF+a+eL dG+l++ mKIAA0743 233 FRTTEPNGLIL--FThGKPQERKDVRSQKntkVDFFAVELLDGNLYL 277 sydlGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervv +d Gsg + v +++++ nDG+W++v + r gr+gt+sV+ ++ mKIAA0743 278 LLDMGSG----TIKVKATQKKANDGEWYHVDIQRDGRSGTISVNSRRT-- 321 dgespsgpditsenLdldtppiLyvGGlPel....qksvkrrlaaistsF p+ + ++se Ldl++ +y+GGlPe++ + ++ + a ++++ mKIAA0743 322 ----PFTASGESEILDLEGD--MYLGGLPENraglILPTELWTAMLNYGY 365 kGCirdvsingkpld<-* +GCird+ i+g+ + mKIAA0743 366 VGCIRDLFIDGRSKN 380 EGF: domain 1 of 2, from 405 to 437: score 23.3, E = 0.0058 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C++ pC+n++ C d+++ + C+C+ +y G++C mKIAA0743 405 CDSY--PCKNNAVCKDGWNRFICDCTGT----GYWGRTC 437 Laminin_G_2: domain 3 of 5, from 471 to 601: score 84.4, E = 2.3e-21 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F ++ GlL + ++++ d l LeL +Gr++l ++l mKIAA0743 471 FMS-QRAYGLLVATTSRdS--------AD-TLRLELDGGRVKLMVNL 507 G........sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv. + + ++s+g+ +l+ g+klnD++WHtV+v+r+g+s+ L+VD+ + + mKIAA0743 508 DcirincnsSKGpETLYAGqKLNDNEWHTVRVVRRGKSLKLTVDDDvAEg 557 g.spgssdtlslnlngp.lylGGlpessksslltltaaqnlvvvs.gFvG + ++++ l+ + + G+ + + +++ ++F G mKIAA0743 558 TmVGDHT---RLEFHNIeT---GIMTEKRYISVV----------PsSFIG 591 Cirdvringe<-* ++++ +ng mKIAA0743 592 HLQSLMFNGL 601 Laminin_G_1: domain 3 of 5, from 471 to 604: score 23.8, E = 8e-05 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F GlL +t +++ D l leL +Gr++++++l mKIAA0743 471 FMSQRAYGLLV----ATTSRDSA------DTLRLELDGGRVKLMVNL 507 .........GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVd. + + + ++++g p+++ +g++ lnD++WH+v ++r g+++ L Vd+ mKIAA0743 508 dcirincnsSKG----PETLYAGQK-LNDNEWHTVRVVRRGKSLKLTVDd 552 geervvdgespsgpditsenLdldtppiLyvGGlPelqksvkrrlaaist + + g+++ g ++ e+ + +t +++kr++ ++ + mKIAA0743 553 DVAE---GTMV-GDHTRLEFHNIETG--------I---MTEKRYISVVPS 587 sFkGCirdvsingkpld<-* sF G ++++++ng ++ mKIAA0743 588 SFIGHLQSLMFNGLLYI 604 Laminin_G_2: domain 4 of 5, from 657 to 785: score 138.6, E = 1.1e-37 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F+T t+++G++l+++g+++ d f+a+eLv G++++++dl mKIAA0743 657 FKT-TSADGFILFNSGDgN---------D-FIAVELVKGYIHYVFDL 692 G.sgg.vlltsg.klnDGqWHtVsverngrs.vtLsVDgg.vv.g.spgs G+++ + s+++lnD+qWH+V+++r+ +++ +L+VD + v ++ ++ + mKIAA0743 693 GnGPNvIKGNSDrPLNDNQWHNVVITRDSSNtHSLKVDTKvVTqViNGAK 742 sdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvri +l+l+g+ly Gl ++ s+l++l a ++gF+GC+ +v + mKIAA0743 743 ----NLDLKGDLYMAGLAQGMYSNLPKLVAS------RdGFQGCLASVDL 782 nge<-* ng+ mKIAA0743 783 NGR 785 Laminin_G_1: domain 4 of 5, from 657 to 788: score 59.5, E = 7.3e-14 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F+Tt+ +G +l+ +++ n+++ a+eLv+G +++ +dl mKIAA0743 657 FKTTSADGFILFNSGDGNDFI-----------AVELVKGYIHYVFDL 692 Gsghrlrpavvrsg.drvlnDGkWHrvelerngrkg.tLsVdgeervvdg G+g p v+ ++dr lnD++WH v+++r ++ ++L+Vd + mKIAA0743 693 GNG----PNVIKGNsDRPLNDNQWHNVVITRDSSNThSLKVDTKV----V 734 espsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCird ++++ ++ nLdl++ Ly Gl s +++l a++++F GC+ + mKIAA0743 735 TQVINGAK---NLDLKGD--LYMAGLAQGMYSNLPKLVASRDGFQGCLAS 779 vsingkpld<-* v++ng++ d mKIAA0743 780 VDLNGRLPD 788 EGF: domain 2 of 2, from 820 to 852: score 27.4, E = 0.00034 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+++ C n G C++ ++g+tC+C + +y+G +C mKIAA0743 820 CQED--SCANQGVCMQQWEGFTCDCSMT----SYSGNQC 852 Laminin_G_2: domain 5 of 5, from 889 to 1008: score 93.6, E = 3.9e-24 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F T t ++G+L + +++g +d fl+L +++G++ ++++ mKIAA0743 889 FST-TVKDGILVRIDSApG-------LGD-FLQLHIEQGKIGVVFNI 926 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd G+ + ++ +++nDG+ H V+++rng+++tL+VD+ +v++ ++g + mKIAA0743 927 GTVDiSIKEERtPVNDGKYHVVRFTRNGGNATLQVDNWpVNeHyPTGRQL 976 tlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvring t ++n++ ++ +GG + + F+G +++++++g mKIAA0743 977 T-IFNTQAQIAIGGKDK------------------GrLFQGQLSGLYYDG 1007 e<-* mKIAA0743 1008 L 1008 Laminin_G_1: domain 5 of 5, from 889 to 1016: score 14.5, E = 0.00055 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F+Tt +G+L +++++ + DFl l + G++ v ++ mKIAA0743 889 FSTTVKDGILV--RIDSAPGLG-------DFLQLHIEQGKIGVVFNI 926 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdges G +++ + + +nDGk+H v +rng ++tL+Vd++ v+ + mKIAA0743 927 GTV----DISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWP--VNEHY 970 psgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdvs p g+ +++t+ ++ +GG k+ + ++ ++ +++G ++ mKIAA0743 971 PTGRQL----TIFNTQAQIAIGGKD---KGRLFQGQLSGLYYDG----LK 1009 ingkpld<-* + ++ ++ mKIAA0743 1010 VLNMAAE 1016 //