hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06338/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0742  ( 1334 res)   mpm06338

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                     90.8    2.8e-23   1
C1_3     C1-like domain                                  10.3       0.21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_3       1/1     671   699 ..     1    30 []    10.3     0.21
JmjC       1/1    1164  1277 ..     1   126 []    90.8  2.8e-23

Alignments of top-scoring domains:
C1_3: domain 1 of 1, from 671 to 699: score 10.3, E = 0.21
                   *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-*
                        Cd+C++ i +    +C+ C F ++++C    
   mKIAA0742   671    EMCDVCDTTIFN-LHWVCPRCGFGVCVDCY    699  

JmjC: domain 1 of 1, from 1164 to 1277: score 90.8, E = 2.8e-23
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      ++   + +++ ++   ++ ++ ++++++ a+++ ++++ +++ + e 
   mKIAA0742  1164    QDGDSDELTIKRFIEGKEKPG-ALWHIYAAKDTEKIREFLKKVSEE- 1208 

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                    ++  ++         +++p+hD++++++   +k+l+ +++ ++ + +vQ
   mKIAA0742  1209 -QGQDNPA--------DHDPIHDQSWYLDRSLRKRLYQEYG-VQGWAIVQ 1248 

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++G+ Vf+++ga+Hqv+Nl ++i++a +F   
   mKIAA0742  1249 FLGDVVFIPAGAPHQVHNLYSCIKVAEDF    1277 

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