hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mef/mef00769/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0740  ( 499 res)   mef00769

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       108.8    6.2e-28   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/2     100   290 ..     1   114 []    58.5  8.7e-13
BTB        2/2     318   416 ..     1   114 []    50.3  2.5e-10

Alignments of top-scoring domains:
BTB: domain 1 of 2, from 100 to 290: score 58.5, E = 8.7e-13
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dv +v  +        +++++a  H+ +La++   S+ F++lf+ +
   mKIAA0740   100    ADVLFVLHD--------QEHIFA--HRIYLATS---SSKFYDLFLMe 133  

                   ..................................................
                    ++++  +++ +++ + ++ ++++++ ++ ++++++++++++ +++ +++
   mKIAA0740   134 ceespcwgggageevpcrdfqgrtqslgsaeegkegpqrtpqadpgassg 183  

                   .................................................i
                   ++ +++   + + ++++++  ++ +++  + +++ + ++ +++ ++ + +
   mKIAA0740   184 qdlpeslalqmeasgseghalsgwskgfvsmhrevrvnpiskrvgpvtvV 233  

                   eldDeallievspeaFralLnflYt.kldlpeedvenveelLelAdfldS
                    ld      +++   Fr+lL+flY+++ld +e+   ++++l + A+ l  
   mKIAA0740   234 RLDP-----SMQSGPFRTLLRFLYSgQLDEKEK---DLLGLAQMAEVL-- 273  

                   YGqip.lvelCeefllknl<-*
                     ++ +l+ ++e+++ k     
   mKIAA0740   274 --EMFdLRMMVENIMNKEA    290  

BTB: domain 2 of 2, from 318 to 416: score 50.3, E = 2.5e-10
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +Dvt+  ++           ++a  Hk +L ++   ++   a+f ++
   mKIAA0740   318    SDVTFTLDD---------GAISA--HKPLLICS---CEWMAAMFGGs 350  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     ++ +++++l+       ++  +++a+L++lYt++l+++ +  ++ +el
   mKIAA0740   351 fvesanreVHLPN------INKMSMQAVLEYLYTkQLSPNLD--LDPLEL 392  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   ++lA+++    ++++lv l      +     
   mKIAA0740   393 IALANRF----CLThLVALQFHNANQLA    416  

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