hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mef/mef00769/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0740  ( 499 res)   mef00769

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  58.3    1.7e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/2      94   290 ..     1   135 []     6.0   0.0064
BTB        2/2     308   416 ..     1   135 []    52.2  1.2e-11

Alignments of top-scoring domains:
BTB: domain 1 of 2, from 94 to 290: score 6.0, E = 0.0064
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l++ ++     DV +v  d        ++++AH+ +La +S+ F++l
   mKIAA0740    94    LDNPLCA----DVLFVLHD-------QEHIFAHRIYLATSSSKFYDL 129  

                   Ftgqfkes..........................................
                   F+   +es+  +++ +++ + ++ ++++++ ++ ++++++++++++ +++
   mKIAA0740   130 FLMECEESpcwgggageevpcrdfqgrtqslgsaeegkegpqrtpqadpg 179  

                   ...........................................iteeess
                    +++++ +++   + + ++++++  ++ +++  + +++ + ++i +   +
   mKIAA0740   180 assgqdlpeslalqmeasgseghalsgwskgfvsmhrevrvnpISKRVGP 229  

                   vsseieledvspedfealLefiYtgelsitqdqksPssckseenvedlLa
                   v+++   + +++  f+ lL+f+Y+g l+ +           e+++  l +
   mKIAA0740   230 VTVVRLDPSMQSGPFRTLLRFLYSGQLDEK-----------EKDLLGLAQ 268  

                   lAadllqipslvdkCeefliksl<-*
                   +A + l++ +l+ ++e+ + k     
   mKIAA0740   269 MA-EVLEMFDLRMMVENIMNKEA    290  

BTB: domain 2 of 2, from 308 to 416: score 52.2, E = 1.2e-11
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                       +e + +g ++DVt+  +d       g  + AHK  L ++ +   a+
   mKIAA0740   308    IKECLSKGTFSDVTFTLDD-------GA-ISAHKPLLICSCEWMAAM 346  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F g       + es  + e+ l++++  +++a+Le++Yt  ls++     
   mKIAA0740   347 FGGS------FVESANR-EVHLPNINKMSMQAVLEYLYTKQLSPN----- 384  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         + +  +l+alA +++ + +lv +  +   +     
   mKIAA0740   385 -----LDLDPLELIALA-NRFCLTHLVALQFHNANQLA    416  

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