hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05109/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0739  ( 1094 res)   mfj05109

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
HCO3_cotransp HCO3- transporter family                 1293.0          0   1
Band_3_cyto   Band 3 cytoplasmic domain                 573.6   1.3e-168   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Band_3_cyto     1/1     150   407 ..     1   278 []   573.6 1.3e-168
HCO3_cotransp   1/1     447   961 ..     1   519 []  1293.0        0

Alignments of top-scoring domains:
Band_3_cyto: domain 1 of 1, from 150 to 407: score 573.6, E = 1.3e-168
                   *->dveeggeRWGKPHVAtLSfhSLlELRrciakGtvLLDLqatsLpgvA
                      dve+ggeRW+KP+VAtLS+hSL+ELR+c+++G vLLD++a+s+++++
   mKIAA0739   150    DVEDGGERWSKPYVATLSLHSLFELRSCLINGSVLLDMRASSIEEIS 196  

                   hlVldqlivsgqlkaedRenVlRALLlKHsHqnEkkdlgflprarSqasi
                   +l+ldq+++  +l ++ R++V++ALL+KH+HqnE ++++++p++rS+a++
   mKIAA0739   197 DLILDQQELLRDLSDSVRVKVREALLKKHHHQNERRRNNLIPIVRSFAEV 246  

                   GkklshhhaqsaslleevpegpvtsgeplspqssprdlemqtlhevggsG
                   Gkk+s+     ++++++ ++       ++spqs+       t+ ev++ G
   mKIAA0739   247 GKKQSD-----PHSMDRDGQ-------TVSPQSA-------TNLEVKN-G 276  

                   vsreistrdkSKvdlkllkKiPedaEAsnVLVGeVDFLErPilAFVRLqe
                   v++e+s++d SKvdl+++kKiP++aEAsnVLVGeVD L+rPi+AFVRL++
   mKIAA0739   277 VNCEHSPVDLSKVDLHFMKKIPTGAEASNVLVGEVDTLDRPIVAFVRLSP 326  

                   AVlLegllEVPVPvRFLFvLLGPsgkgqdYHEIGRaiATLMsDevFhdvA
                   AVlL+gl+EVP+P+RFLF+LLGP gkgq+YHEIGR++AT+M+De+FhdvA
   mKIAA0739   327 AVLLSGLTEVPIPTRFLFILLGPVGKGQQYHEIGRSMATIMTDEIFHDVA 376  

                   YlAkdReDLLsgIdeFLDcsiVLPPgEvdpe<-*
                   Y+Ak+R+DLL+gIdeFLD+++VLPPgE+dp+   
   mKIAA0739   377 YKAKERDDLLAGIDEFLDQVTVLPPGEWDPS    407  

HCO3_cotransp: domain 1 of 1, from 447 to 961: score 1293.0, E = 0
                   *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL
                      +LeRTGRlFGGL++D+KR++PwY+SD+rDAL++QcLA+++F+Y+A++
   mKIAA0739   447    ELERTGRLFGGLVLDVKRKAPWYWSDYRDALSLQCLASFLFLYCACM 493  

                   SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP
                   SP+ITFGGLLGe+Teg+++++Esl++++++Gi++sL+agQPL+IlGsTGP
   mKIAA0739   494 SPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFAGQPLTILGSTGP 543  

                   lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT
                   +LVFE++lFkFCkd+ l+YL++R  IGlW+a++++vlVAt++S+LV+yiT
   mKIAA0739   544 VLVFEKILFKFCKDYALSYLSLRALIGLWTAFLCIVLVATDASSLVCYIT 593  

                   RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp
                   RFT+E+Fa+LI++IFIYE+++KLi++++++P++++++ld+l++y+C+cv 
   mKIAA0739   594 RFTEEAFASLICIIFIYEAIEKLIHLAETYPIHMHSQLDHLSLYYCRCVL 643  

                   Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp
                   Pe++n+++l+++k++++ ++e++w++lt+sec++++g+++g++cg+h+p+
   mKIAA0739   644 PENPNNHTLQYWKDHNILAAEVNWANLTVSECQEMHGEFMGSACGHHgPY 693  

                   qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli
                   +P+++++S+iL+f+TF+++++LK+FK+Sr+FP++vR++++DF+V+++I++
   mKIAA0739   694 TPDVLFWSCILFFATFIVSSTLKTFKTSRYFPTRVRSMVSDFAVFLTIFT 743  

                   MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa
                   Mv++D+lig v+++KL+VP+++kPT+++ RGWfInP+   g+nPwW+++a
   mKIAA0739   744 MVVLDFLIG-VPSPKLQVPNVFKPTRDD-RGWFINPI---GPNPWWTVIA 788  

                   AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC
                   A+iPALL+tILIFM+qQITa+I+n+KE+kLkKG+G+HLDLL+vav++gvC
   mKIAA0739   789 AIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAVMLGVC 838  

                   slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV
                   s++GLPW+vAATV+SitHvnsL++eS+csAPGe+P++lg+rEQRVTGl++
   mKIAA0739   839 SIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMI 888  

                   flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa
                   f+L+G+SV+m+++LkfIPMpVL+GvFLYMGV+SL+GIQ+fdRl+L++MPa
   mKIAA0739   889 FVLMGCSVFMTAVLKFIPMPVLYGVFLYMGVSSLQGIQFFDRLKLFGMPA 938  

                   KyqPDviYvRhVptwRvHLFTli<-*
                   K+qPD+iY+RhVp+++vHLFTl+   
   mKIAA0739   939 KHQPDFIYLRHVPLRKVHLFTLV    961  

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