hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej02120/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0737  ( 627 res)   mej02120

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HMG      DNA-binding domain, high mobility group prot    76.8    2.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HMG        1/1     230   300 ..     1    71 []    76.8  2.6e-18

Alignments of top-scoring domains:
HMG: domain 1 of 1, from 230 to 300: score 76.8, E = 2.6e-18
                   *->kpKrPmsafmlFsqenRakikkenPdlknaeisKklgerWkeLseee
                       p +P sa+ lF  +  a ik +nP+++++e+sK+++ +W  L ee+
   mKIAA0737   230    EPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 276  

                   KapYeekAekdkeryekempeykk<-*
                   K+ Y+ k e++k++y k++++yk    
   mKIAA0737   277 KQVYKRKTEAAKKEYLKALAAYKD    300  

//