hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02120/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0737  ( 627 res)   mej02120

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
HMG_box    HMG (high mobility group) box                 80.2    4.4e-20   1
Extensin_2 Extensin-like region                        -129.0       0.19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
HMG_box      1/1     231   299 ..     1    69 []    80.2  4.4e-20
Extensin_2   1/1     288   590 ..     1   385 []  -129.0     0.19

Alignments of top-scoring domains:
HMG_box: domain 1 of 1, from 231 to 299: score 80.2, E = 4.4e-20
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      P +P+sA+ lf+++  a ik +nP+++ +e+sk+++ +W +L ee K
   mKIAA0737   231    PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 277  

                   apYeakAekeKarYekempeYk<-*
                   + Y +k e++K++Y+k++++Yk   
   mKIAA0737   278 QVYKRKTEAAKKEYLKALAAYK    299  

Extensin_2: domain 1 of 1, from 288 to 590: score -129.0, E = 0.19
                   *->lltlvvalvslslpseasa..kYsYsSPPPpekpYvYkSPPpPspky
                      +   + al +++   e++a+ + +   P P+++     SPPp     
   mKIAA0737   288    KKEYLKALAAYKDNQECQAtvETVELDPVPQSQT---PSPPP----- 326  

                   vykSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPp
                    +    P+       SP P     +SP  P                    
   mKIAA0737   327 -VTAADPA-------SPAPA--STESPALP-------------------- 346  

                   PvykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPP
                   P     S    t s       +S P  +        P +t   + k   P
   mKIAA0737   347 PCIIVNS----TLSSYVANQASSGPGGQ--------PNITKLIITKQMLP 384  

                   PpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksppppe
                    +             ++ +     P +  v  S    v     + +++  
   mKIAA0737   385 SSITMSQGG-----MVTVI-----PAT--VVTSRGLQV----GQTSTATI 418  

                   phkYvYkSPPPPpP.YvyesvpeqkikYvYkSPPPPkksYkspsppkyVY
                   +        P  + + v  sv++       +   PP++       p++  
   mKIAA0737   419 Q--------PSQQAqIVTRSVLQAAAAAAASMQLPPPR-----LQPPPLQ 455  

                   kSpPpPv..ipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpP
                   + p pP+++ + + + PPP +   +p P+k  +     PP+   k +PpP
   mKIAA0737   456 QMPQPPTqqQVTILQQPPPLQAMQQPPPQKVRINLQQQPPPLQSKIVPPP 505  

                   yk....pptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpP
                     + +++  pp + +sP  P      +s P      +    P    +   
   mKIAA0737   506 TLkiqtTVVPPTVESSPEQP-----MNSSPE--AHTVEATSPETICEMIA 548  

                   ppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-*
                    +v     P v s+    v + + +Pv  ++ P+ + +    PP +    
   mKIAA0737   549 DVV-----PEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPVVS    590  

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