hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh04144/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0736 ( 747 res) mbh04144 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MFS_1 Major Facilitator Superfamily 108.4 1.3e-28 1 Sugar_tr Sugar (and other) transporter -4.9 5.3e-06 1 DUF1228 Protein of unknown function (DUF1228) -17.6 0.069 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1228 1/1 190 265 .. 1 87 [] -17.6 0.069 MFS_1 1/1 177 714 .. 1 396 [] 108.4 1.3e-28 Sugar_tr 1/1 173 746 .. 1 488 [] -4.9 5.3e-06 Alignments of top-scoring domains: DUF1228: domain 1 of 1, from 190 to 265: score -17.6, E = 0.069 *->avAMGiGRFaYTPiLPvMmaegqfSlsdAGliAsaNYlGYLvGALlA +v+ +LP + +S s+ G ++ + YlG vGA+l mKIAA0736 190 VVGF---------VLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLW 227 sfgwahvpgreRrvllgGLlatvlLllamaltsgfaavsL<-* + ++ ++++r ll++L + ++ + +++++g +++ mKIAA0736 228 GGLADRLGRR--QCLLISLSVNSVFAFFSSFVQGYGTFLF 265 MFS_1: domain 1 of 1, from 177 to 714: score 108.4, E = 1.3e-28 *->lflatflaglgrsllgpalpylassleesslgqtdtlspteigllls l la ++ g +++g++lp ++ ls + g+l mKIAA0736 177 LGLALMADGVEVFVVGFVLPSAE---KD--MC----LSDSNKGMLGL 214 afslgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafas + +lg+ ++++l+G l+Dr+Grr ll++l + +++++ + f+ mKIAA0736 215 IVYLGMMVGAFLWGGLADRLGRR---Q---CLLISLSVNSVFAFFSSFVQ 258 stslwlllilrallqGlgggllapaaaaliadwfppeergralgivsagf ++ ++l+ r+l +G+g g+ +p + +++++++ e+rg l+++ +++ mKIAA0736 259 --GYGTFLFCRLL-SGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFW 305 glGaalggpllggllaalgwwgssgtfWraaFlilg........ilalla +G++ +++++ +++ ++gw F + + ++ +++ l++ mKIAA0736 306 MIGGVYAAAMAWAIIPHYGW----------SFQMGSayqfhswrVFVLVC 345 allllvlfllpeppakksakpeeeeali...................... a++ +f + ++++++ + e + ++ + ++ +++ + ++ + mKIAA0736 346 AFP--SVFAIGALTTQPESPRFFLENGKhdeawmvlkqvhdtnmrakghp 393 .................................................. ++ + + ++ ++++ + +++++++ ++++ + + +++ +++ + mKIAA0736 394 ervfsvthiktihqedelieiqsdtgtwyqrwgvralslggqvwgnflsc 443 .................................................. +++ ++ + + + + + + + + + ++ + + + +++ + mKIAA0736 444 fspeyrritlmmmgvwftmsfsyygltvwfpdmirhlqavdyaartkvfp 493 .................................................. +++ + + + + +++ ++++ +++ + + ++ + +++ ++ ++ mKIAA0736 494 gervehvtfnftlenqihrggqyfndkfiglrlksvsfedslfeecyfed 543 .................plr.lll.p.lllillalflllaaflalltflp +++++ ++ + ++ + + l++ +++ ++l+ + mKIAA0736 544 vtssntffrnctfintvFYNtDLFeYkFVNSRLV--------------NS 579 lylllpllls.saglslsalaagllllalglggllgglllggrlsdrlgr ++l+ + + ++++ + + +++++lg +++l g ++++ l+d++g mKIAA0736 580 TFLHNKEGCPlDVTGTGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIG- 628 glarkgeaeaerrrllllgllllalgllllafapslsalllvallllGlg r r+l+ +++l ++++++l+f++s s +++++l+l+G mKIAA0736 629 -----------RLRMLAGSSVLSCVSCFFLSFGNSES-AMIALLCLFGGV 666 fggvfpalnalasdlappeaqerGtasGlyntagslggalgpllgGllld + + al +l+++l+p + +r ta+G++n++ l+++lg +++ ++ mKIAA0736 667 SIASWNALDVLTVELYPSD--KRTTAFGFLNALCKLAAVLGISIFTSFVG 714 <-* mKIAA0736 - - Sugar_tr: domain 1 of 1, from 173 to 746: score -4.9, E = 5.3e-06 *->valvaalgGgflfGYDtgvigafltliaflkrfglltssgaleelvg + +v l+ G v+g++l + k+ +l+ s++ mKIAA0736 173 LYFVLGLAL-MADGVEVFVVGFVLPSAE--KDMCLSDSNK------- 209 ystvltglvvsiffvGcliGslfaGwlgdrfGRkksllialvlfviGall g+ i+ +G+++G+++ G l+dr+GR+ +lli+l + ++ a+ mKIAA0736 210 ------GMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFF 253 maaapgktTiGgwavyllivGRvlvGlgvGgisvlvPmYisEiAPkklRG + + +++ ++++R+l+G g+Gg + +v Y sE+ ++RG mKIAA0736 254 SSFVQ--------GYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRG 295 algslyqlgitiGilvAaiiglglnktnndaal.......nswgWRiplg s+ +++ iG++ Aa + ++++ ++ ++ + ++ WR+ + mKIAA0736 296 EHLSWLCMFWMIGGVYAAAMAWAIIPHYG--WSfqmgsayQFHSWRVFVL 343 lqavpalllligllflPESPRwLvekgkleeAravLaklrgv........ ++a p+++ + +l+ PESPR+++e+gk++eA vL++ +++ + ++++ mKIAA0736 344 VCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTnmrakghp 393 .....edvdqeiqeekaeleatveee...........kagkaswleLfrg ++ + +++ i +e + +e ++ ++ ++ + + ++g ++w+ +++ mKIAA0736 394 ervfsVTHIKTIHQEDELIEIQSDTGtwyqrwgvralSLGGQVWGNFLSC 443 rtrpkyrqrllmgvmlqifqQltGiNaifyYsptifks............ + p yr+ +lm ++++++ ++++ +++ +i + + + +++ mKIAA0736 444 FS-PEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLqavdyaartkvf 492 .................................................. ++++ ++ + + + +++ +++++ +++ + + ++ + +++ ++ + mKIAA0736 493 pgervehvtfnftlenqihrggqyfndkfiglrlksvsfedslfeecyfe 542 ...............................................aGv + +++++ ++ + ++ +++ + + +++ +++ +++++ ++ v mKIAA0736 543 dvtssntffrnctfintvfyntdlfeykfvnsrlvnstflhnkegcpLDV 592 sdsrasllvtiivgvvNfvfTlvali.......flvdrfGRRpllllGaa + + ++ +v+ v f+ Tl ++++ + +l+d++GR ++l +++ mKIAA0736 593 TGT---GEGAYMVYFVSFLGTLAV-LpgnivsaLLMDKIGRLRMLAGSSV 638 gmaicflilgasvivallllskskdpsskgagivaivfillfiafFalgw ++ +++l+ + +s+ +i++++lf + +w mKIAA0736 639 LSCVSCFFLS-----FGNSESA------------MIALLCLFGGVSIASW 671 GpvpwvivsElFPlgvRskamalataanwlanfiigflfpyitgaiglfl + + v++ El+P+ R++a+++ a+ la ++ +f++ g + mKIAA0736 672 NALD-VLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVGITK--- 717 ggyvflvfagllvlfilfvfffvPETkGrtLeeieelf<-* ++fa +++++ +++PET+G +++ mKIAA0736 718 --AAPILFASAALALGSSLALKLPETRG-------QVL 746 //