hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06312/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0735 ( 588 res) mbg06312 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MFS_1 Major Facilitator Superfamily 111.3 1.9e-29 1 DUF1228 Protein of unknown function (DUF1228) -26.2 0.45 1 Sugar_tr Sugar (and other) transporter -42.1 8.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1228 1/1 24 108 .. 1 87 [] -26.2 0.45 MFS_1 1/1 20 555 .. 1 396 [] 111.3 1.9e-29 Sugar_tr 1/1 14 588 .] 1 488 [] -42.1 8.4e-05 Alignments of top-scoring domains: DUF1228: domain 1 of 1, from 24 to 108: score -26.2, E = 0.45 *->avAMGiGRFaYTPiLPvMmaegqfSlsdAGliAsaNYlGYLvGALlA +A G+ F+ LP + +S s G ++ + YlG +GA+ + mKIAA0735 24 LMADGVEIFVVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFIL 70 sfgwahvpgreRrvllgGLlatvlLllamaltsgfaavsL<-* + ++ +++ vl +L+ + + ++++++g a+++ mKIAA0735 71 GGLADKLGRK--KVLSMSLAINASFASLSSFVQGYGAFLF 108 MFS_1: domain 1 of 1, from 20 to 555: score 111.3, E = 1.9e-29 *->lflatflaglgrsllgpalpylassleesslgqtdtlspteigllls l la ++ g ++++++alp ++ ls++ g+l mKIAA0735 20 LGLALMADGVEIFVVSFALPSAE---KD--MC----LSSSKKGMLGL 57 afslgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafas + +lg+ ++++++G l+D++Gr+ + vl+++l++ a ++ l+ f+ mKIAA0735 58 IVYLGMMAGAFILGGLADKLGRK---K---VLSMSLAINASFASLSSFVQ 101 stslwlllilrallqGlgggllapaaaaliadwfppeergralgivsagf ++ ++l+ r++ +G+g g+ +p + a++++++++e+rg l++++ ++ mKIAA0735 102 --GYGAFLFCRLI-SGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFW 148 glGaalggpllggllaalgwwgssgt.....fWraaFlilgilallaall G++ +++++ +++ ++gw++s gt+ + + Wr ++ ++ a +++++ mKIAA0735 149 MTGGIYASAMAWSIIPHYGWGFSMGTnyhfhSWRVFVIVCALPATVSMVA 198 llvlfllpeppakksakpeeeeali......................... + f ++ p+ + + +e i ++ +++ + ++++++ + + + mKIAA0735 199 --LKFMPESPRFLLEMGKHDEAWMIlkqvhdtnmrakgtpekvftvshik 246 .................................................. ++++ ++ + +++++++ +++ + + ++ +++ ++ + ++ mKIAA0735 247 tpkqmdefieiqsstgtwyqrwlvrfmtifkqvwdnalycvmgpyrmntl 296 .................................................. + + + + + + ++ + ++++ +++ + ++ + + + mKIAA0735 297 ilavvwftmalsyygltvwfpdmiryfqdeeykskmkvffgehvhgatin 346 .................................................. + +++ + ++ +++ + + +++ ++ ++ +++++ ++ mKIAA0735 347 ftmenqihqhgklvndkfikmyfkhvlfedtffdkcyfedvtstdtyfkn 396 .......plr.lll.p.lllillalflllaaflalltflplylllpllls + +++++ + l +++++ +++ +++l + + + mKIAA0735 397 ctiesttFYNtDLYkHkFINCRFI--------------NSTFLEQKEGCH 432 .saglslsalaagllllalglggllgglllggrlsdrlgrglarkgeaea + + +l+++lg +++l g ++++ l+dr+g mKIAA0735 433 mDFEEDND--FLIYLVSFLGSLSVLPGNIISALLMDRIG----------- 469 errrllllgllllalgllllafapslsalllvallllGlgfggvfpalna r +++ ++l+ a+++++l+f++s s +++ + +l+ +++ al + mKIAA0735 470 -RLKMIGGSMLISAVCCFFLFFGNSES-AMIGWQCLFCGTSIAAWNALDV 517 lasdlappeaqerGtasGlyntagslggalgpllgGllld<-* ++++l+p + r+ta+G++n + +g++lg ++++ ++ mKIAA0735 518 ITVELYPTN--QRATAFGILNGLCKFGAILGNTIFASFVG 555 Sugar_tr: domain 1 of 1, from 14 to 588: score -42.1, E = 8.4e-05 *->valvaalgGgfl.fGYDtgvigafltliaflkrfglltssgaleelv ++l+ +lg ++ G + v++++l + k+ +l++s++ mKIAA0735 14 WTLFFVLGLALMaDGVEIFVVSFALPSAE--KDMCLSSSKK------ 52 gystvltglvvsiffvGcliGslfaGwlgdrfGRkksllialvlfviGal g+ i+ +G++ G++++G l+d++GRkk l ++l++ a mKIAA0735 53 -------GMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFAS 95 lmaaapgktTiGgwavyllivGRvlvGlgvGgisvlvPmYisEiAPkklR l+ + +++ ++++R+++G+g+Gg +v Y sE+ ++R mKIAA0735 96 LSSFVQ--------GYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKR 137 GalgslyqlgitiGilvAaiiglglnktnndaalnswg...........W G s+ ++ +G++ A + + ++ ++ wg + +++ + ++W mKIAA0735 138 GEHLSWLGIFWMTGGIYASAMAWSIIPHYG------WGfsmgtnyhfhsW 181 RiplglqavpalllligllflPESPRwLvekgkleeAravLaklrgv... R+ ++++a+pa + ++l f PESPR+L+e gk++eA +L++ +++ + mKIAA0735 182 RVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTnmr 231 ................edvdqeiqeekaeleatveee.kagkaswleLfr ++++++ + ++ ++++ +e++e+ ++ +++ + + ++++ mKIAA0735 232 akgtpekvftvshiktPKQMDEFIEIQSSTGTWYQRWlVRFMTIFKQVWD 281 g...rtrpkyrqrllmgvmlqifqQltGiNaifyYsptifks........ + + ++ yr +l++++++++ l+++ +++ +i ++++ +++ mKIAA0735 282 NalyCVMGPYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFqdeeyksk 331 .................................................. + +++ ++ + + + +++ +++++ +++ + ++ +++ ++ mKIAA0735 332 mkvffgehvhgatinftmenqihqhgklvndkfikmyfkhvlfedtffdk 381 .................................................. ++ +++++ ++ + ++++ +++ +++ + + +++ +++++ mKIAA0735 382 cyfedvtstdtyfknctiesttfyntdlykhkfincrfinstfleqkegc 431 .......aGvsdsrasllvtiivgvvNfvfTlvaliflvdrfGRRpllll + + ++++ + lv+++ ++ +++ +l+dr+GR ++ mKIAA0735 432 hmdfeedNDFLIY----LVSFLGSLSVLPGNIIS-ALLMDRIGRLKMIGG 476 GaagmaicflilgasvivallllskskdpsskgagivaivfillfiafFa ++++ a+c+++l +++ s+s +++ +++ + a mKIAA0735 477 SMLISAVCCFFL-------FFGNSES--------AMIGWQCLFCGTSIAA 511 lgwGpvpwvivsElFPlgvRskamalataanwlanfiigflfpyitgaig w+ + vi+ El+P++ R++a+++ + ++ ++ +++f++ g + mKIAA0735 512 --WNALD-VITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITK 558 lflggyvflvfagllvlfilfvfffvPETkGrtLeeieelf<-* v ++ a+ +++++ ++ + +PET+ ++l mKIAA0735 559 -----VVPILLAAASLVGGGLIALRLPETRE------QVLM 588 //