hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0734  ( 1159 res)   mbg10039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     139.7    3.1e-37   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     184   353 ..     1    92 []    71.8  8.5e-17
C2         2/2     998  1106 ..     1    92 []    67.9  1.3e-15

Alignments of top-scoring domains:
C2: domain 1 of 2, from 184 to 353: score 71.8, E = 8.5e-17
                   *->tLtvkiisArnLp........DPYVkvs...................
                       L+v +++A+nL  +++++ +DPY+ +   + ++ ++ +++++ ++ 
   mKIAA0734   184    ALKVSVMRAKNLLakdpngfsDPYCMLGilpassapqessgqkeqrf 230  

                   ..................kTkvvkktlsgfNPvWnEesetFeFevpp...
                   + +++++++++ + +  + T+v+  tl   NPvW E   +F Fe+++ ++
   mKIAA0734   231 gfrkgskrssplpakciqVTEVKNSTL---NPVWKE---HFLFEIDDvnt 274  

                   s.LeieVyDk........................................
                   ++L++ ++D++++ +  +  ++ ++  + ++ ++  +   ++ + +++ +
   mKIAA0734   275 DqLHLDIWDHdddvslaeacrklneviglkgmtryfkqivksarangtag 324  

                   .......dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++++++df+G+++ip              ++e++  g +++    
   mKIAA0734   325 ptedhtdDFLGCLNIP--------------IREVPvAGADrWF    353  

C2: domain 2 of 2, from 998 to 1106: score 67.9, E = 1.3e-15
                   *->tLtvkiisArnLp........DPYVkvs.............kTkvvk
                      +L v ++ A +L + + ++ +DP+V+v+ ++++  +  ++++T v+ 
   mKIAA0734   998    RLAVEVLHAADLLpldanglsDPFVIVElgpphlfplvrsqRTQVKA 1044 

                   ktlsgfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiG
                   +tl   +Pv++E    F+F+vp +  +++++ + ++V+D++  +++df G
   mKIAA0734  1045 RTL---HPVYDE---LFHFSVPAeacrrrgAcVLFTVMDHdwlstnDFAG 1088 

                   rvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ ++              l  + +  r+++    
   mKIAA0734  1089 EAALG--------------LGGISgIARPhVG    1106 

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