hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0734  ( 1159 res)   mbg10039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      167.2    2.7e-46   2
DUF1041  Domain of Unknown Function (DUF1041)            40.1    4.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     185   294 ..     1    88 []    79.6  6.2e-20
DUF1041    1/1     549   631 ..     1   122 []    40.1  4.9e-08
C2         2/2     999  1091 ..     1    88 []    87.5  2.6e-22

Alignments of top-scoring domains:
C2: domain 1 of 2, from 185 to 294: score 79.6, E = 6.2e-20
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qk.........
                      L+V v++AknL +kD +ng sDPY+ + +++  + +q ++++++++ 
   mKIAA0734   185    LKVSVMRAKNLLAKD-PNGFSDPYCMLGILPASSApQEssgqkeqrf 230  

                   .................kkTkvikktlNPvWNEtFtFevpppdlqetLei
                   + +++++++++ + +  + T+v+++tlNPvW E+F Fe+++ + ++ L++
   mKIAA0734   231 gfrkgskrssplpakciQVTEVKNSTLNPVWKEHFLFEIDDVNTDQ-LHL 279  

                   eVyDydrfgrddflGevs<-*
                    ++D+d +     l e++   
   mKIAA0734   280 DIWDHDDDV---SLAEAC    294  

DUF1041: domain 1 of 1, from 549 to 631: score 40.1, E = 4.9e-08
                   *->ktvvkdclkaaarvwydfifenakieermekqveqpgpqraPvvpCI
                      +++++++lk+++r+wyd +++ +  ++r     eqpgpqr+      
   mKIAA0734   549    SMDIAAALKRGNREWYDQLLNTK--SPR-----EQPGPQRLA----- 583  

                   LMNNvQglrvqlekkledmGGikLielvisvLkelqeklnevLnqFpqel
                         gl+++++ ++ed+      +l+++v+++l++    v +      
   mKIAA0734   584 ------GLVELADIIYEDL------QLCYGVYASLFHR--QVAE------ 613  

                   nlgkesAedlwslf.avdldsaleEq<-*
                           + w+l++ ++ ++ le+    
   mKIAA0734   614 --------EAWVLTeELSPKMNLEVA    631  

C2: domain 2 of 2, from 999 to 1091: score 87.5, E = 2.6e-22
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qk..kkTkvik
                      L V v+ A +L p D +ng+sDP+V v+lg+ +  + +++++T v+ 
   mKIAA0734   999    LAVEVLHAADLLPLD-ANGLSDPFVIVELGPPHLFpLVrsQRTQVKA 1044 

                   ktlNPvWNEtFtFevpppdlqe...tLeieVyDydrfgrddflGevs<-*
                   +tl+Pv++E F+F+vp + + +++ ++ ++V+D+d ++ +df Ge+    
   mKIAA0734  1045 RTLHPVYDELFHFSVPAEACRRrgaCVLFTVMDHDWLSTNDFAGEAA    1091 

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