hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06380/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0733  ( 685 res)   mpm06380

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CUE      Domain that may be involved in binding ubiqu    44.0      2e-08   1
ZnF_RBZ  Zinc finger domain                              39.5    4.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUE        1/1       1    42 [.     1    43 []    44.0    2e-08
ZnF_RBZ    1/1     658   682 ..     1    25 []    39.5  4.5e-07

Alignments of top-scoring domains:
CUE: domain 1 of 1, from 1 to 42: score 44.0, E = 2e-08
                   *->eneealsqlkemFPnldeevIeavLeantgnveatinnLLegs<-*
                         ++l++l++ FP+++e+v+++++++n++n++a++++L ++s   
   mKIAA0733     1    -DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQES    42   

ZnF_RBZ: domain 1 of 1, from 658 to 682: score 39.5, E = 4.5e-07
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                       +W+C+aCtflN++  ++C++C+ p   
   mKIAA0733   658    AQWNCTACTFLNHPALIRCEQCEMP    682  

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