hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06380/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0733  ( 685 res)   mpm06380

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
CUE        CUE domain                                    47.0    4.2e-10   1
zf-RanBP   Zn-finger in Ran binding protein and other    21.7      0.013   1
Extensin_2 Extensin-like region                        -124.8       0.13   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
CUE          1/1       1    42 [.     1    43 []    47.0  4.2e-10
Extensin_2   1/1     139   490 ..     1   385 []  -124.8     0.13
zf-RanBP     1/1     655   685 .]     1    32 []    21.7    0.013

Alignments of top-scoring domains:
CUE: domain 1 of 1, from 1 to 42: score 47.0, E = 4.2e-10
                   *->vneealhelkemFPqldksvIravLeantgnveatinnLLegs<-*
                         ++lh+l++ FP+++++v+++++++n++n++a++++L ++s   
   mKIAA0733     1    -DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQES    42   

Extensin_2: domain 1 of 1, from 139 to 490: score -124.8, E = 0.13
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                       ++     +   l s+ + + s + P    +  v   P         
   mKIAA0733   139    GASNSTPHLGFHLGSKGTSNLSQQTPRFN-PIMVTLAPNIQT----G 180  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                   +S P +    +    PPP  v +SP      +Y  P      Y   P+  
   mKIAA0733   181 RSTPTS---LHIHGVPPP--VLNSPQGN--SIYIRP------YITTPSGT 217  

                   .......ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkY
                    ++++++  + S   P+              P++ y  + p p t    Y
   mKIAA0733   218 arqtqqhSGWVSQFNPM-------------NPQQAYQPSQPGPWT---TY 251  

                   .kSPPPPpyvYkspPpPvkk..ripyvY...kSPPPPpPYvYkSpPppvk
                   + S P P   + s   P +++++   vY + +SP  P P        p  
   mKIAA0733   252 pASNPLP---HTSTQQPNQQghQTSHVYmpiSSPTTPQP--------PT- 289  

                   kyiyksppppephkYvYk....SPPPPpP..YvyesvpeqkikYvYkSPP
                     i++s    +  +  Y+ ++ S  P + +  +  ++p+++   + +S  
   mKIAA0733   290 --IHSSGSSQSSAHSQYNiqniSTGPRKNqiEIKLEPPQRNSSSKLRSSG 337  

                   PPkksYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkS
                   P + s  s    +   +  P      +Y    PP+     +  +p vY S
   mKIAA0733   338 PRTASTSSLVNSQTLNRNQPT-----VYIAASPPNTDEMISRSQPKVYIS 382  

                   PPPPt.............yvYkSpPpPyk.......pptppkiyksPPPP
                        +++++ +++++     +S P    ++ +++ +  p++i+  PP  
   mKIAA0733   383 ANATAgdeqgmrnqptlfISTNSGPSAASrnmsgqvSMGPAFIHHHPPKS 432  

                   tPvyvYkspPpippiksssppPvyvYkSpPppvysPPPPyvYssPPPPvy
                     v   +s+   p + ++ p   y +k       sP  P       P v 
   mKIAA0733   433 R-VLGGNSATS-PRVVVTQPNTKYTFK----ITVSPNKP-------PAV- 468  

                   vynsaPvykksPPkhhYiYsSPPPphh<-*
                       +P  + sP          P ++    
   mKIAA0733   469 ----SP-GVVSPTFELTNLLNHPDHYV    490  

zf-RanBP: domain 1 of 1, from 655 to 685: score 21.7, E = 0.013
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                       +g +W+C ++C++ N +   +C +C+ p+     
   mKIAA0733   655    EEGAQWNC-TACTFLNHPALIRCEQCEMPRHF    685  

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