hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm08199/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0728 ( 1589 res) mpm08199 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SPEC Spectrin repeats 369.8 1.7e-106 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SPEC 1/12 36 136 .. 1 104 [] 33.5 2.9e-05 SPEC 2/12 143 245 .. 1 104 [] 51.2 1.4e-10 SPEC 3/12 252 352 .. 1 104 [] 29.7 0.00039 SPEC 4/12 362 461 .. 1 104 [] 2.4 5.3 SPEC 5/12 468 571 .. 1 104 [] 22.8 0.049 SPEC 6/12 578 682 .. 1 104 [] 29.7 0.00041 SPEC 7/12 689 791 .. 1 104 [] 67.1 2.3e-15 SPEC 8/12 798 900 .. 1 104 [] 53.4 3e-11 SPEC 9/12 907 1009 .. 1 104 [] 31.0 0.00017 SPEC 10/12 1016 1118 .. 1 104 [] 19.8 0.14 SPEC 11/12 1125 1227 .. 1 104 [] 55.6 6.4e-12 SPEC 12/12 1234 1335 .. 1 104 [] 56.5 3.6e-12 Alignments of top-scoring domains: SPEC: domain 1 of 12, from 36 to 136: score 33.5, E = 2.9e-05 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q +lr + ++ l++k + l+s l+ ++v+++l+ q+l+ mKIAA0728 36 QSLLRSLSGTLTELDDKLsSGLTSGALP-----DAVNQQLEAAQRLK 77 aelaaheervdalnelgeqLiee.sghpdaeeIeerleeLnerWeeLlel +e++++++++++ +e +e+L + ++++ ++e+ ++le + + +++++++ mKIAA0728 78 QEIEQQAPKIKEAQEVCEDLSALvKEEYLKAELSRQLEGILKSFKDIEQK 127 aeeRrqkLe<-* +e+ q+L+ mKIAA0728 128 TENHVQHLQ 136 SPEC: domain 2 of 12, from 143 to 245: score 51.2, E = 1.4e-10 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale +qF++ +++ aWl+ k++++ s ++ l+ +e+ll ++++ mKIAA0728 143 HQFQQMSKDFQAWLDAKKeEQRDSPPIS--AKLDVLESLLNSQKDFG 187 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela + +++ + +++ + +ge L+ + +++++++++ +l+ +++ W++ ++++ mKIAA0728 188 KTFTEQSNIYEKTISEGENLLLKTQGAEKAALQLQLNTMKTDWDRFRKQV 237 eeRrqkLe<-* +eR++kL+ mKIAA0728 238 KEREEKLK 245 SPEC: domain 3 of 12, from 252 to 352: score 29.7, E = 0.00039 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++ + ++ l W++ + l + D+++ e+ + +++ l++ mKIAA0728 252 LKYREQVETLRPWIDRCQHSLDGVTFS--LDPTESESSIAELKSLQK 296 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++ h ++ ln++++ L++ ++ d+e++ e + L e+ +++ e+++ mKIAA0728 297 EMDHHFGMLELLNNTANSLLSV-CEVDKEAVTEENQSLMEKVNRVTEQLQ 345 eRrqkLe<-* + Le mKIAA0728 346 SKTVSLE 352 SPEC: domain 4 of 12, from 362 to 461: score 2.4, E = 5.3 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa q+ rd + ++ +e+ + + l + + ++ l +qa mKIAA0728 362 QEVSRDTQRQLQDTKEQLevhHSLGPQAYS--------NKHLSVLQA 400 leaelaaheervdalnelgeqLiee.sghpdaeeIeerleeLnerWeeLl ++ l++ +++vd+ ++l+++L+ e + ++ + e L e+ eL mKIAA0728 401 QQKSLQTLKQQVDEAKRLAQDLVVEaADSKGTSDVLLQAETLAEEHSELS 450 elaeeRrqkLe<-* ++++e+ Le mKIAA0728 451 QQVDEKCSFLE 461 SPEC: domain 5 of 12, from 468 to 571: score 22.8, E = 0.049 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale +F+ ++e+ + +e ++l ++g +D e+++++ q++ mKIAA0728 468 GHFQNTIREMFSQFTECDdELDGMAPVG--RDAETLRKQKACMQTFL 512 aelaaheervdalnelgeqLieesghpdaeeIeerl..eeLnerWeeLle + l+a ++ d+ n++++ +++ ++ + I +++ e+L ++ ++Ll+ mKIAA0728 513 KKLEALMASNDSANRTCKMMLAT-EETSPDLIGVKRdlEALSKQCNKLLD 561 laeeRrqkLe<-* +a+ R+++ + mKIAA0728 562 RAKTREEQVD 571 SPEC: domain 6 of 12, from 578 to 682: score 29.7, E = 0.00041 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale ++F+r+++e+ l+ +e+ s+ ++g e+++++l+ ++ ++ mKIAA0728 578 EEFHRKLEEFSTLLQKAEeHEESQGPVG--TETETINQQLDVFKVFQ 622 ael.aaheervdalnelgeqLiee.sghpdaeeIeerleeLnerWeeLle +e + + + +++n lg+ Li++ + + + +e l+ +n+rW+ L + mKIAA0728 623 KEEiEPLQVKQQDVNWLGQGLIQSaAANTCTQGLEHDLDSVNSRWKTLNK 672 laeeRrqkLe<-* ++++R +L+ mKIAA0728 673 KVAQRTSQLQ 682 SPEC: domain 7 of 12, from 689 to 791: score 67.1, E = 2.3e-15 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +F+++++ l++W+ ++e+l++ + ++ s v+a++++++ l++ mKIAA0728 689 GRFQDALESLLSWMADTEELVANQKPP-SAEFKVVKAQIQEQKLLQR 734 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae l+ ++ +v+ ++++ge++ ++++++d ++ ++l L++rWe+Ll +ae mKIAA0728 735 LLEDRKSTVEVIKREGEKIAASAEPADRVKLTRQLSLLDSRWEALLSRAE 784 eRrqkLe<-* +R ++Le mKIAA0728 785 ARNRQLE 791 SPEC: domain 8 of 12, from 798 to 900: score 53.4, E = 3e-11 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q+F++ ++ l +Wl+ e++l++se++g + +e+++ +H+ le mKIAA0728 798 QEFHETLEPLNEWLTAVEkKLANSEPIG--TQAPKLEEQISQHKVLE 842 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela +++++h ++ + g+ L+ s+ +d++ ++ +l+ L+ + e++e++ mKIAA0728 843 DDITNHSKQLHQAVSIGQSLKVLSSREDKDLVQSKLDSLQVWYFEIQEKS 892 eeRrqkLe<-* R + L+ mKIAA0728 893 HSRSELLQ 900 SPEC: domain 9 of 12, from 907 to 1009: score 31.0, E = 0.00017 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea F +d el++Wl+e ls + ++++e++ ++ ++ al++ mKIAA0728 907 KIFGEDEVELMNWLNEVHGKLSKLSVQ-DHSPEALWRQRAELRALQE 952 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae ++ ++++vd+ g +L+++ +++ I+++le++++r++++ +l++ mKIAA0728 953 DILLRKQSVDQALLNGLELLKQTTGDEVLIIQDKLEAIKARYKDITKLSA 1002 eRrqkLe<-* + + Le mKIAA0728 1003 DVAKTLE 1009 SPEC: domain 10 of 12, from 1016 to 1118: score 19.8, E = 0.14 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q+++ +el +Wl+ e +lls e g e++ + ++++++l+ mKIAA0728 1016 GQLQSMHKELCNWLDKVEvELLSYETQG--LKGEAASQVQERQKELK 1060 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela +e+ +++ vd+lne +L+e + e +e+ ++e ner++ + + mKIAA0728 1061 NEVRSNKALVDSLNEVSSALLELVPWRAREGLEKTIAEDNERYRLVSDTI 1110 eeRrqkLe<-* ++ + + mKIAA0728 1111 TQKVEEID 1118 [output cut off at A = 10 top alignments] //