hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00847/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0726  ( 959 res)   mbh00847

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                               71.8    8.5e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/2      53   146 ..     1   121 []    55.7  5.9e-12
CA         2/2     169   247 ..     1   121 []    16.1    0.063

Alignments of top-scoring domains:
CA: domain 1 of 2, from 53 to 146: score 55.7, E = 5.9e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.............lFsId
                      + A D+D++             ++Y  +  + + ++++ + +   +d
   mKIAA0726    53    LFALDKDAP-------------LRYAGEIcgfrlhgsgvpfeAVILD 86   

                   petGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgG
                   + tG         e+ i++++p D E+q         +e+t+t++A D G
   mKIAA0726    87 KATG---------EGLIRAKEPVDCEAQ---------KEHTFTIQAYDCG 118  

                   gpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                   + p g++ +         +s  atv+v+V DvN+ aP   
   mKIAA0726   119 EGPDGTNTK---------KSHKATVHVRVNDVNEFAP    146  

CA: domain 2 of 2, from 169 to 247: score 16.1, E = 0.063
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v A+D D     + ++     +  Y+il ++++F Id ++       
   mKIAA0726   169    VEAIDGDCS--PQYSQ-----ICYYEILTpntPFLIDNDGN------ 202  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                         i  t+ L +            + Y +tv+A D G  +       
   mKIAA0726   203 ------IENTEKLQYSGE---------KLYKFTVTAYDCGKKR------- 230  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                             + a+v ++V+      P   
   mKIAA0726   231 --------AADDAEVEIQVKP--TCKP    247  

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