hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00847/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0726 ( 959 res) mbh00847 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Cadherin Cadherin domain 20.7 0.021 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cadherin 1/2 36 139 .. 1 107 [] 9.2 0.18 Cadherin 2/2 153 242 .. 1 107 [] 11.4 0.12 Alignments of top-scoring domains: Cadherin: domain 1 of 2, from 36 to 139: score 9.2, E = 0.18 *->ysasvpEnapvGtevlt..vtAtDaDdPlgpNgri.rYsilggnp.g y++ v+En +t +l++++ A D+D Pl g i +++ g +++ mKIAA0726 36 YQGIVMEN--DNTVLLNppLFALDKDAPLRYAGEIcGFRLHGSGVpF 80 gwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasggg +d++tG+ g+i+ ++p+D+E++ e+++t+ A D+ g+ mKIAA0726 81 EAVILDKATGE--GLIRAKEPVDCEAQ--KEHTFTIQAYDC-------GE 119 pplsst......atvtitVl<-* p + ++++++atv++ V mKIAA0726 120 GPDGTNtkkshkATVHVRVN 139 Cadherin: domain 2 of 2, from 153 to 242: score 11.4, E = 0.12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y a v E+ ++l+v A+D D +++ ++i Y + ++ + F mKIAA0726 153 YRAAVTEGKL-YDRILRVEAIDGDC-SPQYSQICYYEILTP-NTPFL 196 IdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllasgggppl Id +G i t+ L + +++ Y +tv A D+ g + mKIAA0726 197 IDN-DGN----IENTEKLQY---SgEKLYKFTVTAYDC-------GKKRA 231 sstatvtitVl<-* + a+v i+V mKIAA0726 232 ADDAEVEIQVK 242 //