hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj47066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0725  ( 583 res)   mfj47066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            56.4    3.6e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     300   365 ..     1    67 []    56.4  3.6e-12

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 300 to 365: score 56.4, E = 3.6e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      +++ + +++ e L++++l++ +  F+k+++d e+l+l+t + dL+e+
   mKIAA0725   300    MDrGDASTLEEDLKKLQLSEFVTVFEKEKVDREALALCT-DRDLQEM 345  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gi +lG+RkkIl+ ++  k++   
   mKIAA0725   346 GI-PLGPRKKILNHFSARKNS    365  

//