hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj47066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0725  ( 583 res)   mfj47066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DDHD     DDHD domain                                    202.6    6.3e-57   1
SAM_1    SAM domain (Sterile alpha motif)                34.3    2.9e-06   1
WWE      WWE domain                                      24.2     0.0031   1
SAM_2    SAM domain (Sterile alpha motif)                23.5      0.005   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WWE        1/1      49   129 ..     1    89 []    24.2   0.0031
SAM_1      1/1     301   363 ..     1    66 []    34.3  2.9e-06
SAM_2      1/1     300   365 ..     1    72 []    23.5    0.005
DDHD       1/1     402   572 ..     1   267 []   202.6  6.3e-57

Alignments of top-scoring domains:
WWE: domain 1 of 1, from 49 to 129: score 24.2, E = 0.0031
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      + ++++ +   ++ +W+y +  d++  W+p++ ++s+ +E+ay  +k
   mKIAA0725    49    DASSSYEP---VSPHWFYCKVLDSKELWIPFNSEDSQQLEDAYGSGK 92   

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +   +   v ++ G +Y++ + ++ ++ +++      +eVrR   
   mKIAA0725    93 D-CNERI-V-PTDGGRYDVHLGERMRYAVYWD--ELPSEVRR    129  

SAM_1: domain 1 of 1, from 301 to 363: score 34.3, E = 2.9e-06
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      d  + +++ e L+++ l ++ +  F +++++d ++l+++t  DL+++
   mKIAA0725   301    DRGDASTLEEDLKKLQL-SEFVTVF-EKEKVDREALALCTDRDLQEM 345  

                   GvtllGHrkkIlssIqgLk<-*
                   G+  lG+rkkIl+     k   
   mKIAA0725   346 GI-PLGPRKKILNHFSARK    363  

SAM_2: domain 1 of 1, from 300 to 365: score 23.5, E = 0.005
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      ++  +++++ e L+++ l  +++  F++ +++  e+l +  t  dL 
   mKIAA0725   300    MDRGDASTLEEDLKKLQL-SEFVTVFEKEKVDR-EAL-ALCTDRDL- 342  

                   klalGitsvghRkkilskiqelkqq<-*
                   + ++Gi  +g+Rkkil+++   k +   
   mKIAA0725   343 Q-EMGI-PLGPRKKILNHFSARKNS    365  

DDHD: domain 1 of 1, from 402 to 572: score 202.6, E = 6.3e-57
                   *->LdFkvenfFaiGSPlGlfltiRgtkiGDRPEFPnldslDllvsrpaC
                      L +k+e+fFa+GSP+G+flt+Rg           l ++D+++++p+C
   mKIAA0725   402    LNYKPEIFFAFGSPIGMFLTVRG-----------LRRIDPNYKFPTC 437  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                   k+f+NI+HP                                    el+e+
   mKIAA0725   438 KGFFNIYHP------------------------------------ELREG 451  

                   ltrviadlpqnflsnlqssikstnvltaasgasrkneeeteevkestars
                   ltr+++dl++n+l +l++++ks   +t++++++ +++e++ee++++    
   mKIAA0725   452 LTRMSMDLKNNLLGSLRMAWKS---FTRGPYPALQASETAEETEAE---- 494  

                   GCSPRmTpapeqtenltemliareeravesqpssfsrdSiedekktvaen
                               +e+ +e+  + e +++e  p +                
   mKIAA0725   495 ------------PESSSEK--SNEANTEEP-PVE---------------- 513  

                   ietakeaskeehlaekvlmskLngtkRIDYvLqePaallafnsYlsalks
                             e  +++v  ++Lng++RIDYvLqe +++++fn+Yl+al+s
   mKIAA0725   514 --------VKEEAPINV--GMLNGGQRIDYVLQE-KPIESFNEYLFALQS 552  

                   HasYWeSeDvAlFlLkeiyr<-*
                   H++YWeSeD++l++Lkeiy+   
   mKIAA0725   553 HLCYWESEDTVLLVLKEIYQ    572  

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