hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02469/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0723  ( 852 res)   mbh02469

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_U1   U1-like zinc finger                             74.0    1.8e-17   2
RRM      RNA recognition motif                           69.2    5.1e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_U1     1/2     294   328 ..     1    37 []    35.5  7.2e-06
RRM        1/2     405   475 ..     1   121 []    24.2     0.01
RRM        2/2     503   573 ..     1   121 []    45.0    1e-08
ZnF_U1     2/2     803   838 ..     1    37 []    43.4  2.9e-08

Alignments of top-scoring domains:
ZnF_U1: domain 1 of 2, from 294 to 328: score 35.5, E = 7.2e-06
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      ++++ C++C++ ++ +++++  +H++G+ H ++++++   
   mKIAA0723   294    GYPHLCSICDLPVH-SNKEW-SQHINGASHSRRCQLL    328  

RRM: domain 1 of 2, from 405 to 475: score 24.2, E = 0.01
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++++  +    +    +L +l               ++fG v+s ++
   mKIAA0723   405    VVHIMDF-QRGKNLRYQLLQLV--------------EPFG-VISNHL 435  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + +k                           + aF+e+++ edA++A  +
   mKIAA0723   436 ILNKI--------------------------NEAFIEMATTEDAQAA--V 457  

                   ealnaskGkeledgGrptlglrVe<-*
                   + +  ++   +   G+p   +rV    
   mKIAA0723   458 DYYT-TTPALV--FGKP---VRVH    475  

RRM: domain 2 of 2, from 503 to 573: score 45.0, E = 1e-08
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++ +NL +++  +++ + +l               +++Gk+++  +
   mKIAA0723   503    VIHLSNL-PHSGYSDSAVLKLA--------------EPYGKIKNYIL 534  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r k                             aF+e+e++edA +   +
   mKIAA0723   535 MRMKS---------------------------QAFIEMETREDAMAM--V 555  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++   +k  ++  +Gr+   ++V+   
   mKIAA0723   556 DHCL-KKALWF--QGRC---VKVD    573  

ZnF_U1: domain 2 of 2, from 803 to 838: score 43.4, E = 2.9e-08
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      ++gfyCklC+++++++e++   +H+++  H +++kk+   
   mKIAA0723   803    KTGFYCKLCSLFYTNEEVAK-NTHCSSLPHYQKLKKF    838  

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